Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52210 314 / 9e-111 ATGB1, ATARLB1 GTP-binding protein 1 (.1.2) AT2G15310 119 / 1e-33 ATARFB1A ADP-ribosylation factor B1A (.1) AT3G62290 118 / 1e-33 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT5G14670 118 / 1e-33 ATARFA1B ADP-ribosylation factor A1B (.1) AT2G47170 118 / 1e-33 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT1G23490 118 / 1e-33 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT1G10630 118 / 1e-33 ATARFA1F ADP-ribosylation factor A1F (.1) AT1G70490 118 / 1e-33 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT2G18390 116 / 7e-33 HAL, ARL2, TTN5, ATARLC1 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1) AT2G24765 113 / 8e-32 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005749 [exp] 379 / 3e-136 AT5G52210 337 / 2e-119 GTP-binding protein 1 (.1.2) Lus10038871 [exp] 361 / 2e-127 AT5G52210 326 / 3e-113 GTP-binding protein 1 (.1.2) Lus10014991 [exp] 355 / 1e-126 AT5G52210 320 / 1e-112 GTP-binding protein 1 (.1.2) Lus10001524 [exp] 121 / 2e-34 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10026383 [exp] 119 / 6e-34 AT2G18390 317 / 3e-112 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1) Lus10031436 [exp] 118 / 9e-34 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 119 / 1e-33 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 123 / 3e-33 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10013021 [exp] 118 / 2e-32 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G138500 [exp] 338 / 5e-120 AT5G52210 348 / 7e-124 GTP-binding protein 1 (.1.2) Potri.015G140400 [exp] 330 / 6e-117 AT5G52210 343 / 1e-121 GTP-binding protein 1 (.1.2) Potri.005G142100 [exp] 120 / 2e-34 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.007G024800 [exp] 119 / 4e-34 AT2G18390 326 / 1e-115 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1) Potri.001G301200 [exp] 118 / 1e-33 AT3G62290 284 / 4e-99 ADP-ribosylation factor A1E (.1.2.3) Potri.013G005500 [exp] 118 / 1e-33 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.010G152600 [exp] 118 / 1e-33 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.008G100000 [exp] 118 / 1e-33 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 118 / 1e-33 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 118 / 1e-33 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10027446 pacid=23144547 polypeptide=Lus10027446 locus=Lus10027446.g ID=Lus10027446.BGIv1.0 annot-version=v1.0 ATGGAGTTTCATGTGCTCATTCTGGGGATCGACAAGGCCGGGAAAACGACCCTGCTTGAAAAGTTGAAAACAGTATACTCAAATTCAGAAGGCCTCCCAC CTGATAGGATCGTTCCAACTGTCGGACTAAATATTGGTCGTCTTGAAGTGTCAAATTCCAAACTTGTGTTCTGGGATCTGGGAGGGCAGATTGGACTGCG CTCGATTTGGGAGAAATATTACGAAGAAGCACATGCCGTTGTATTTGTAATCGATGCTGCTTGCCCTTCCAGGTTTGAAGATGCAAAATCTGCTTTAGAG AAAGTTCTAAGGCATGATGATCTGCAAGGTGCCCCTCTTCTTGTAATGGCAAACAAACAGGACCTTCCAGACGCCGTAACAGCTGAAGAACTGGGTAGAT ATTTGGACCTCAAGAAGTTGGATGAAAGGGTTTATATGTTTGAAGCTGTTTCAGCGTACGATGGGTTGGGTATCAAAGGAAGCCTAGAATGGCTGGTTGA GGCAATGGAACGGAGCAAGAGAACCGAAACGTTAAGACTTCGTGCAGGGATGAACGGTGCTGGCACATAG
AA sequence Show only first row Show all	>Lus10027446 pacid=23144547 polypeptide=Lus10027446 locus=Lus10027446.g ID=Lus10027446.BGIv1.0 annot-version=v1.0 MEFHVLILGIDKAGKTTLLEKLKTVYSNSEGLPPDRIVPTVGLNIGRLEVSNSKLVFWDLGGQIGLRSIWEKYYEEAHAVVFVIDAACPSRFEDAKSALE KVLRHDDLQGAPLLVMANKQDLPDAVTAEELGRYLDLKKLDERVYMFEAVSAYDGLGIKGSLEWLVEAMERSKRTETLRLRAGMNGAGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10027446 [exp]	0	1
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034468 [exp]	2.8	0.9444
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	3.0	0.9385
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Lus10016600 [exp]	3.9	0.9364
AT1G05410			Protein of unknown function (D...		Lus10004900 [exp]	4.0	0.9247
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10032822 [exp]	4.2	0.9349
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10041016 [exp]	6.9	0.9333
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	7.1	0.9397
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	7.9	0.9327
AT4G34140			D111/G-patch domain-containing...		Lus10039947 [exp]	8.2	0.9002
AT1G55680			Transducin/WD40 repeat-like su...		Lus10035667 [exp]	8.5	0.9380

Compare expression of checked genes

Lus10027446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.