Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46580 47 / 3e-06 MBD05, MDB5, MDB05, MBD5, ATMBD5 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) AT5G52230 44 / 0.0001 MBD13 methyl-CPG-binding domain protein 13 (.1.2) AT5G59380 40 / 0.0008 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005748 [exp] 293 / 2e-100 ND 36 / 0.009 Lus10014989 [exp] 58 / 2e-09 AT5G52230 86 / 4e-17 methyl-CPG-binding domain protein 13 (.1.2) Lus10038869 [exp] 57 / 5e-09 AT5G52230 82 / 4e-16 methyl-CPG-binding domain protein 13 (.1.2) Lus10005888 [exp] 45 / 5e-05 AT5G59800 123 / 5e-32 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) Lus10004963 [exp] 43 / 0.0002 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10005460 [exp] 40 / 0.0007 AT5G59380 101 / 1e-27 methyl-CPG-binding domain 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G138300 [exp] 64 / 4e-11 AT5G52230 84 / 2e-16 methyl-CPG-binding domain protein 13 (.1.2) Potri.015G140100 [exp] 62 / 9e-11 AT5G52230 81 / 2e-15 methyl-CPG-binding domain protein 13 (.1.2) Potri.001G240100 [exp] 48 / 1e-06 AT3G46580 117 / 7e-33 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Potri.009G031100 [exp] 43 / 8e-05 AT3G46580 110 / 2e-30 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF01429 [flax] [poplar] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Lus10027447 pacid=23144491 polypeptide=Lus10027447 locus=Lus10027447.g ID=Lus10027447.BGIv1.0 annot-version=v1.0 ATGGAGAATCCGTTTCCGACGATTGGCGACGGCAAGGCCGACGAAGTACTTCCGGAAGGTTGGACGGTTCAGGTGAACGTTAGGAAGGACGGCAGGAAGG ACAAGCTTTACACTGAGCCTATTCATGGCTACACGTTCCGATCGATGAAGGAAGTGCATAGGTACGTCGAGAATGGGTTGCTTGGAAGCCGATCAACGAG GTCGCCGCGTGACAAAGATGCATCCAATGATTTACTAGCTTCAGCGAAGAGACTGGACTTCGGAACGATGAATGGCGAGGATGACAGCTTGAAGGTAACG AGCATGGCTTCTCTACTAAACACAATCCCCCCAGAGATTCATACAGTGAATGGCGAGGGAATCGGACCGAGCTCCATGAAAGCCACTGAAGAAGCTTCTC CAGAATTGGAAATCCTCCCAGATATGCAAACCAACGGATTCAAGAAGAAGGGAGGTAACCAGCTTCCTCGTCGGGCTTCGAAGAGAAATGCCGGCCCACC ACTCAAGCTTCACTCAACACCAAACAACAATACTCCTAAGCGGAAGCAGCCCGGCACGCCTGGCGAGGTAAGAGAAGGCCAGTCCGGTAGTAGCAATAGG AGGAAGAAGGGCAATGATGTTGATGCTGACGAGGAATGTGATGAGCTAGCACCGTCGGTGAAGCAATGTATGGACATGGTTGAATCGCTCCCTGGTGTGG ATGACGATCCGGAGTTTGATCTGACGATTGTGGCCAGCAGGCTGTTCGTGAAGAAGATATATCGCGTAATGTTCGGTAGCCTACGAGAGGACAAGCGGAT CAAGTGGCTTAGGGAATATGCTAGAGAAGGAGTCACTGCAGACTGA
AA sequence Show only first row Show all	>Lus10027447 pacid=23144491 polypeptide=Lus10027447 locus=Lus10027447.g ID=Lus10027447.BGIv1.0 annot-version=v1.0 MENPFPTIGDGKADEVLPEGWTVQVNVRKDGRKDKLYTEPIHGYTFRSMKEVHRYVENGLLGSRSTRSPRDKDASNDLLASAKRLDFGTMNGEDDSLKVT SMASLLNTIPPEIHTVNGEGIGPSSMKATEEASPELEILPDMQTNGFKKKGGNQLPRRASKRNAGPPLKLHSTPNNNTPKRKQPGTPGEVREGQSGSSNR RKKGNDVDADEECDELAPSVKQCMDMVESLPGVDDDPEFDLTIVASRLFVKKIYRVMFGSLREDKRIKWLREYAREGVTAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10027447 [exp]	0	1
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10011565 [exp]	6.2	0.7983
					Lus10005748 [exp]	6.7	0.7801
AT3G55050			Protein phosphatase 2C family ...		Lus10015047 [exp]	7.7	0.7924
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10028520 [exp]	7.7	0.7317
					Lus10027448 [exp]	9.6	0.7802
AT3G63390			unknown protein		Lus10024829 [exp]	13.3	0.7377
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	13.6	0.7901
AT1G11120			unknown protein		Lus10018462 [exp]	13.9	0.7110
AT1G22950			2-oxoglutarate (2OG) and Fe(II...		Lus10000171 [exp]	14.5	0.7323
AT5G18130			unknown protein		Lus10005702 [exp]	16.7	0.7570

Compare expression of checked genes

Lus10027447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.