Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48890 270 / 6e-92 MSBP2, ATMP2, ATMAPR3 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) AT5G52240 253 / 2e-85 ATMAPR5, ATMP1, MSBP1 ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 5, membrane steroid binding protein 1 (.1.2) AT2G24940 105 / 5e-29 ATMAPR2 membrane-associated progesterone binding protein 2 (.1) AT4G14965 79 / 2e-17 ATMAPR4 membrane-associated progesterone binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005746 [exp] 461 / 1e-167 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10014988 [exp] 340 / 8e-120 AT3G48890 260 / 2e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10038868 [exp] 336 / 3e-118 AT3G48890 265 / 2e-90 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10038356 [exp] 191 / 1e-61 AT3G48890 216 / 2e-71 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10002241 [exp] 105 / 7e-29 AT2G24940 172 / 1e-57 membrane-associated progesterone binding protein 2 (.1) Lus10029567 [exp] 110 / 5e-28 AT5G47740 187 / 4e-57 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10018026 [exp] 74 / 2e-15 AT4G14965 361 / 3e-127 membrane-associated progesterone binding protein 4 (.1) Lus10034799 [exp] 69 / 3e-15 AT2G24940 87 / 3e-24 membrane-associated progesterone binding protein 2 (.1) Lus10042022 [exp] 63 / 2e-11 AT4G14965 357 / 5e-126 membrane-associated progesterone binding protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G137800 [exp] 314 / 9e-110 AT3G48890 259 / 3e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.015G139800 [exp] 310 / 4e-108 AT3G48890 277 / 3e-95 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.015G125100 [exp] 183 / 2e-58 AT3G48890 201 / 1e-65 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.018G016900 [exp] 108 / 3e-30 AT2G24940 171 / 6e-57 membrane-associated progesterone binding protein 2 (.1) Potri.006G266200 [exp] 107 / 7e-30 AT2G24940 160 / 1e-52 membrane-associated progesterone binding protein 2 (.1) Potri.016G022700 [exp] 73 / 2e-15 AT4G14965 345 / 3e-121 membrane-associated progesterone binding protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Lus10027449 pacid=23144620 polypeptide=Lus10027449 locus=Lus10027449.g ID=Lus10027449.BGIv1.0 annot-version=v1.0 ATGGCGCTTCAGCTATGGGAGACGCTGCAGCAAGCTATAACGGCGTACACGGGGCTAACGCCGGCGACTTTCTTCACGGTGCTGGCTTTTGGGTTGGCCG TTTACTACCTGCTTTCTGGGATGTTTGGGTCAACTAATCCTCCGCCTAGGCCCAGGAGCTTCGAGGAAGACGTGCAGCCGCTGCCGCCGCCTGTGCAGCT TGGGGAGATCGGTGAGGATGAGCTGAAGCAGTACGATGGGACCGATCCTAAGAAGCCTCTGCTTATGGCTATCAAGGGTCAGATCTACGATGTCTCGCAG AGCAGGATGTTTTACGGTCCCGGTGGGCCATACGCGTTATTTGCCGGGAAGGATGCCAGCAGAGCACTGGCGAAGATGTCGTTCGAAGAGAAGGATCTGA CGGGAGACATCTCAGGACTTGGTTCGTTCGAGATGGAAGCTCTGCAGGACTGGGAATACAAGTTCATGAGTAAGTATGTCAAGGTCGGTACCATCAAGAA GGAAGTACCAGTCGTCGATGATGGTTCGTCCAGCGAGCAGCCCGCTGCCGAAGTCACTGCTGATGCTACCGAGAATGGCGATGTGAAGCCTGCAAGTACT GAAGCTGATGACAACAAGGCAGCAGCTGAAGACGGTCCATCCCCGACAGGTGTTGAGCATCCGGTGGCTCCTTCATCTGGTGGTGAATCAAAAGAGGAGT GA
AA sequence Show only first row Show all	>Lus10027449 pacid=23144620 polypeptide=Lus10027449 locus=Lus10027449.g ID=Lus10027449.BGIv1.0 annot-version=v1.0 MALQLWETLQQAITAYTGLTPATFFTVLAFGLAVYYLLSGMFGSTNPPPRPRSFEEDVQPLPPPVQLGEIGEDELKQYDGTDPKKPLLMAIKGQIYDVSQ SRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGSFEMEALQDWEYKFMSKYVKVGTIKKEVPVVDDGSSSEQPAAEVTADATENGDVKPAST EADDNKAAAEDGPSPTGVEHPVAPSSGGESKEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10027449 [exp]	0	1
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10037412 [exp]	1.0	0.9165
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10007930 [exp]	4.5	0.8795
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	6.0	0.8794
AT5G23230		NIC2	nicotinamidase 2 (.1)		Lus10040988 [exp]	6.3	0.8642
AT1G07080			Thioredoxin superfamily protei...		Lus10042270 [exp]	6.9	0.8639
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10034452 [exp]	7.1	0.8553
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10007357 [exp]	7.7	0.8448
AT5G35732			unknown protein		Lus10006404 [exp]	8.5	0.8680
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10000963 [exp]	9.5	0.8490
AT2G31820			Ankyrin repeat family protein ...		Lus10027074 [exp]	10.5	0.8417

Compare expression of checked genes

Lus10027449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.