Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48880 414 / 2e-146 RNI-like superfamily protein (.1.2) AT4G11580 105 / 3e-26 RNI-like superfamily protein (.1) AT5G57900 64 / 2e-11 SKIP1 SKP1 interacting partner 1 (.1) AT4G05497 55 / 2e-08 RNI-like superfamily protein (.1) AT4G05490 49 / 2e-06 RNI-like superfamily protein (.1) AT4G05475 49 / 2e-06 RNI-like superfamily protein (.1) AT4G05460 48 / 4e-06 RNI-like superfamily protein (.1) AT4G08980 47 / 1e-05 FBW2 F-BOX WITH WD-40 2 (.1.2.3.4.5) AT4G30640 43 / 0.0002 RNI-like superfamily protein (.1) AT4G05470 43 / 0.0002 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005745 [exp] 577 / 0 AT3G48880 431 / 4e-153 RNI-like superfamily protein (.1.2) Lus10023277 [exp] 55 / 3e-08 AT4G05460 247 / 3e-80 RNI-like superfamily protein (.1) Lus10038528 [exp] 55 / 3e-08 AT4G05460 249 / 5e-81 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G139700 [exp] 422 / 9e-150 AT3G48880 386 / 2e-135 RNI-like superfamily protein (.1.2) Potri.012G137700 [exp] 419 / 2e-148 AT3G48880 389 / 1e-136 RNI-like superfamily protein (.1.2) Potri.016G019500 [exp] 57 / 4e-09 AT3G48880 76 / 7e-16 RNI-like superfamily protein (.1.2) Potri.001G373900 [exp] 54 / 3e-08 AT3G48880 50 / 7e-07 RNI-like superfamily protein (.1.2) Potri.012G106700 [exp] 49 / 1e-06 AT3G48880 55 / 3e-08 RNI-like superfamily protein (.1.2) Potri.002G099100 [exp] 43 / 0.0002 AT4G08980 352 / 1e-121 F-BOX WITH WD-40 2 (.1.2.3.4.5) Potri.010G054600 [exp] 43 / 0.0002 AT3G26000 395 / 7e-135 Ribonuclease inhibitor (.1) Potri.018G104900 [exp] 41 / 0.0006 AT5G57900 377 / 8e-132 SKP1 interacting partner 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027450 pacid=23144574 polypeptide=Lus10027450 locus=Lus10027450.g ID=Lus10027450.BGIv1.0 annot-version=v1.0 ATGGATGAGGGTGGATCATCAGTGAGGAGATGGGAGGATCTGGACACAGATATCTTGGTGAAGATATTCCAGTCATTCGACATCTTCGAATTGACTTCAG GGTTAGCTCACGTTTGTAGTTCGTGGCGTATGGCCTGCTCCGATCCTCTGCTGTGGAAAACACTCGACTTGTCGATTATGAAATCCAATTTCATTAAGAT CCCTCTAGAGCCTTACGTGTATGTCAATGGTCGATCAGATAAGACCTTGACACGATTGCTGAGGATATCGCTGAATCTCAGTCAAGGAAGCATCACTTCA TTGATATTCCATTTCAACTTGTATGTGAGCGATGAACAGCTGACTTACACAGCTGAAAGGAGTCCACATCTCAAAAGGCTGGTCCTGCCAGCATGGAACC GAATAAAAAAGACCGGCATATGCGCAGCGATTCGCTCATGGAAAGAACTTGAATCCCTAACAATGCCGAGCATAGCGAATCCTCCATATCTCATGGACGA AATCGCCAATAACTGCGGAAACTTCCATGAGCTCAAGGTCATGGGACCTTTCGACATTTTCTTCGCTTCAACACTGGTAACGCGTCTCACGAGATTGAAA GTGTTGAGCCTCCGGTGCGCGATGCTACCAAGGGACGCCCTGATCATCCTACTGGACGGCCTGCATAATCTTGAAGTCCTCAACATATCGCACTGCCTTC TGATCGAAATCCCACTACCTCCCGCGCCTAGACGAGTCATGAAGGAGTTAGACGCCACGATTTTGCAGAAGGCGAAGCGACTGAGTCAGTTCTTAACGTG CATGGATGAGGAGTCGTGCATTATGTGCCAGAGGACTAAGGCCGACGAAGGGCTCATGCGGTGGTATAGGTACGAGGAAGGACTGTGGAAAGAGGATGAG GTGAACTCTCTTGCTCTGTAA
AA sequence Show only first row Show all	>Lus10027450 pacid=23144574 polypeptide=Lus10027450 locus=Lus10027450.g ID=Lus10027450.BGIv1.0 annot-version=v1.0 MDEGGSSVRRWEDLDTDILVKIFQSFDIFELTSGLAHVCSSWRMACSDPLLWKTLDLSIMKSNFIKIPLEPYVYVNGRSDKTLTRLLRISLNLSQGSITS LIFHFNLYVSDEQLTYTAERSPHLKRLVLPAWNRIKKTGICAAIRSWKELESLTMPSIANPPYLMDEIANNCGNFHELKVMGPFDIFFASTLVTRLTRLK VLSLRCAMLPRDALIILLDGLHNLEVLNISHCLLIEIPLPPAPRRVMKELDATILQKAKRLSQFLTCMDEESCIMCQRTKADEGLMRWYRYEEGLWKEDE VNSLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48880			RNI-like superfamily protein (...		Lus10027450 [exp]	0	1
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Lus10031956 [exp]	6.9	0.8121
AT3G22550			Protein of unknown function (D...		Lus10042606 [exp]	10.4	0.8024
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10012258 [exp]	17.1	0.7975
AT5G43920			transducin family protein / WD...		Lus10022847 [exp]	25.1	0.7983
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	26.3	0.7936
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10019260 [exp]	27.3	0.7696
AT1G13880			ELM2 domain-containing protein...		Lus10000680 [exp]	29.7	0.7735
AT1G44920			unknown protein		Lus10018656 [exp]	32.2	0.7591
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10032327 [exp]	32.7	0.7517
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	34.6	0.7859

Compare expression of checked genes

Lus10027450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.