Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48900 554 / 0 single-stranded DNA endonuclease family protein (.1.2) AT1G01880 132 / 2e-32 5'-3' exonuclease family protein (.1.2) AT3G28030 127 / 3e-30 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) AT5G26680 72 / 2e-13 5'-3' exonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005744 [exp] 1050 / 0 AT3G48900 563 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10041375 [exp] 117 / 2e-27 AT1G01880 660 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10039424 [exp] 116 / 1e-26 AT3G28030 548 / 8e-170 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10036554 [exp] 107 / 4e-24 AT1G01880 624 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10039423 [exp] 64 / 7e-11 AT3G28030 269 / 3e-82 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10000270 [exp] 59 / 3e-09 AT5G26680 512 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10027250 [exp] 50 / 4e-06 AT1G18090 495 / 1e-170 5'-3' exonuclease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G142800 [exp] 664 / 0 AT3G48900 609 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Potri.017G070500 [exp] 123 / 4e-29 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Potri.014G077300 [exp] 115 / 5e-27 AT1G01880 667 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.013G000700 [exp] 63 / 3e-10 AT5G26680 650 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.002G152801 [exp] 57 / 1e-08 AT1G01880 190 / 7e-55 5'-3' exonuclease family protein (.1.2) Potri.011G077001 [exp] 50 / 4e-06 AT1G29630 750 / 0.0 5'-3' exonuclease family protein (.1.2.3) Potri.015G041400 [exp] 47 / 4e-05 AT1G18090 584 / 0.0 5'-3' exonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF00752 [flax] [poplar] XPG_N XPG N-terminal domain CL0464 [flax] [poplar] 5_3_exonuc_C PF00867 [flax] [poplar] XPG_I XPG I-region
Representative CDS sequence Show only first row Show all	>Lus10027451 pacid=23144461 polypeptide=Lus10027451 locus=Lus10027451.g ID=Lus10027451.BGIv1.0 annot-version=v1.0 ATGGGAGTGAAGAACTTATGGGACATCTTAGAATCATGCAAGAAAACATTACCACTCCATCATCTCCAGAACAAAAGGGTGTGCATAGATCTCTCCTGTT GGATGGTTCAGCTCGAAAATGTCAACAAATCACACTGTGCTCTCAAGGAGAAGCTCTACCTCAAGGGTCTTTTTCATCGCCTTAGAGCTCTCATCGCTTT GAATTGCAGCCTTATCGTGGTTACTGATGGTTCAATCCCAGCAATCAAATTGGCTACTTATAGACGAAGGTTAAACTCTGCACCAGAGTTAAGTCTGTTT AGTTCAATTGTTCTTTTGAAATTGCTGCGGGCTACTCAGGACGAAACGAGTTCACAGAACGCATGCTCGCTTAAACGAAATGCGGGTTCGGAGTTCTCTC GCATGGTAAATGAAGCTAAGTTGCTCGGTTCAGCACTTGGGATTCCTTGCTTAGACAGCATGGAGGAAGCTGAAGCACAATGTGCAGCGCTAAATGCAGA ATCTCAGTGTGATGGATGCTTCAGTTCAGATTCAGACATTTTCCTTTTTGGTGCGAGAACTGTATACCGAGACATATCCCTTGGGGATGGTGGTCACGTT GTCTGCTATGAAATGGCTGACATCGAAAGGAAACTTGGGTTTGGGAGAAACTCATTGATTACGTTGGCCCTTCTTCTCGGAAGCGACTACTCTAATGGAG TTTACGGCCTAGGTCCAGAGTCAGCTTGCCGGATTGTTAAAACCATCGGAGACAATACTATCCTTCAGAGAATTGCATCAGAAGGACTTTCCTTGGCAAA GAGGAAGAGTAAGAAGAAGAATGGTGCTTCATCTTTGAATGAGAACCAGCTGGAACCTGAAATCCCTGCCGATACAGAACGACAGAAACAGTTTCTGCAA GTAATCGACGCGTATCTAAAGCCCAAATGCCACTCCGCCGATTCGGAATCAGTCTACAAGGCTCTAGGTCTGTACCCATTTCAACATAACAAGTTACAAC AGATCTGTGCAGACTTCTTTGGTTGGCCTCCTGAAAAAACAGATGAATACATCCTTCCGAAAGTAGCCGAGCGAGACCTTAGACGATTCGCAAACTTGCG TTCGACTTCATCCAAACTGGGAGTTGCACCTTCTTTGGACATGATGCCAATCAATTGCCCTGTAGTGGAAATCATTAAACCGCGAAAAGTGCAAGGGAGG GAATGCTTCGAGGTTTCGTGGGAAGGTTTCGATGGACTTAAGACGTCTATAGTTCCTGCTGATCTTGTACAGAAAGCTTGCCCAGAAAGGATTACAGAGT TTGAAGAGAAAAAAGCACAGGCAAAGAAACAAAACCAGCGCAAACCGAGAGCAAAGAAATCACAGAAGGGACATGATCTTGCTGAGCTAGACATGAAACT TCAGAGCCTAATGCTCGAAATTGAATCAGGATCGGGAGGGAGCAGCAGTGTTCCATCGAACGGTGAGATCGAGAGCTCTGACAAGATGCCCAGTTCATCT ATCATCGATTTGACAGAAGATCAGTATGAAGCCACAGGTATTGAGAGGAATGCCATGTCATCAGAGTTCGTCGATCTTTTGACCCCTGCTCCACTACCTG GTAAGAGTCTCACAGTTTCGACTTTACGAAATGAGATTGACGATGGAGCCATTGTTATTCCGGTGATAGACTTGAGTGACTCGGAGATAGACGAGTCCCC ACAGCCTCTGGAGAAACGTTTGTACAGTTACATCAAGAAGCTGTAA
AA sequence Show only first row Show all	>Lus10027451 pacid=23144461 polypeptide=Lus10027451 locus=Lus10027451.g ID=Lus10027451.BGIv1.0 annot-version=v1.0 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWMVQLENVNKSHCALKEKLYLKGLFHRLRALIALNCSLIVVTDGSIPAIKLATYRRRLNSAPELSLF SSIVLLKLLRATQDETSSQNACSLKRNAGSEFSRMVNEAKLLGSALGIPCLDSMEEAEAQCAALNAESQCDGCFSSDSDIFLFGARTVYRDISLGDGGHV VCYEMADIERKLGFGRNSLITLALLLGSDYSNGVYGLGPESACRIVKTIGDNTILQRIASEGLSLAKRKSKKKNGASSLNENQLEPEIPADTERQKQFLQ VIDAYLKPKCHSADSESVYKALGLYPFQHNKLQQICADFFGWPPEKTDEYILPKVAERDLRRFANLRSTSSKLGVAPSLDMMPINCPVVEIIKPRKVQGR ECFEVSWEGFDGLKTSIVPADLVQKACPERITEFEEKKAQAKKQNQRKPRAKKSQKGHDLAELDMKLQSLMLEIESGSGGSSSVPSNGEIESSDKMPSSS IIDLTEDQYEATGIERNAMSSEFVDLLTPAPLPGKSLTVSTLRNEIDDGAIVIPVIDLSDSEIDESPQPLEKRLYSYIKKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48900			single-stranded DNA endonuclea...		Lus10027451 [exp]	0	1
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10028544 [exp]	9.6	0.8920
AT4G31880			unknown protein		Lus10018332 [exp]	10.2	0.8928
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10031539 [exp]	21.0	0.8737
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10001909 [exp]	22.4	0.8733
AT5G52950			unknown protein		Lus10039318 [exp]	24.1	0.8070
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10021611 [exp]	27.5	0.8723
AT3G58930			F-box/RNI-like superfamily pro...		Lus10002820 [exp]	31.9	0.8435
AT5G63950		CHR24	chromatin remodeling 24 (.1)		Lus10015690 [exp]	36.0	0.8617
AT3G16730		HEB2	hypersensitive to excess boron...		Lus10024756 [exp]	38.0	0.8693
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10013226 [exp]	39.7	0.8660

Compare expression of checked genes

Lus10027451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.