Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25540 413 / 1e-135 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT3G18524 197 / 5e-56 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G02070 166 / 5e-45 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G24495 162 / 1e-43 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT4G17380 147 / 1e-38 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G20475 137 / 2e-35 ATMSH5 MUTS-homologue 5 (.1) AT3G24320 99 / 2e-22 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT5G54090 97 / 1e-21 DNA mismatch repair protein MutS, type 2 (.1) AT1G65070 76 / 8e-15 DNA mismatch repair protein MutS, type 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005743 [exp] 664 / 0 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10042967 [exp] 188 / 9e-53 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10032469 [exp] 173 / 1e-47 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10017724 [exp] 171 / 1e-46 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10010010 [exp] 163 / 5e-44 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10033095 [exp] 140 / 2e-36 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10007489 [exp] 136 / 4e-35 AT4G17380 1205 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10028966 [exp] 133 / 8e-35 AT4G17380 413 / 3e-137 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10025030 [exp] 119 / 3e-29 AT4G02070 350 / 7e-104 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G142900 [exp] 452 / 1e-150 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.012G060000 [exp] 191 / 7e-54 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.014G121701 [exp] 177 / 4e-49 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.001G156200 [exp] 160 / 2e-43 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.006G159200 [exp] 157 / 3e-42 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G156314 [exp] 157 / 3e-42 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.011G089500 [exp] 130 / 4e-33 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1) Potri.008G191051 [exp] 100 / 3e-24 AT4G02070 294 / 1e-91 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.010G065000 [exp] 95 / 6e-21 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Potri.012G005000 [exp] 84 / 2e-17 AT5G54090 847 / 0.0 DNA mismatch repair protein MutS, type 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00488 [flax] [poplar] MutS_V MutS domain V
Representative CDS sequence Show only first row Show all	>Lus10027452 pacid=23144554 polypeptide=Lus10027452 locus=Lus10027452.g ID=Lus10027452.BGIv1.0 annot-version=v1.0 ATGATCAATTGCCGAACTGCTTGGGACAGCTTCCTAAGCGGTTTCAGTAAATATATAGAGTTCCAAGCTGCTGGTCAAGCACTTGCTGCTTTGGATTGCT TACTTTCTCTTGCCACTCTTTCGAAAACTAAGAGTTACGTTCGCCCAACCTTCGTGGACGACAGTGAACCAGTCCAGATAGATATCTGCTGTGGTCGTCA CCCGGTTTTGGAAACTATATTGCATGATACTTTCGTCCCCAATGATACAAAGCTAAATGCTCGTGGAGAATACTGTCAGATTGTTACTGGACCAAACATG GGTGGCAAGAGTTGTTACATACGCCAAGTTGCTCTCATTGCTATCATGGCCCAAGTTGGCTCATTTGTACCAGCATCATCTTGTAAGCTGCATGTGCTGG ATGGTATCTATACTCGGATGGGAGCTTCCGATAGCATTCAACAAGGACGAAGTACTTTCCTAGAAGAGCTTAATGAGACTTCAAATATACTCCAGAAATG TACATCTCAATCCTTAGTCATCATCGATGAGCTCAGTAGGGGCACAAACACACATGATGGGGAAGCTATCGCTTTTGCCACTTTACACCATCTTCTGGAG CAGAAAAGGTGCATGGTCCTTTTCGTGACCCACTACCCGAAAATCTCAGAGATCGAAATGACATTTCCAGGCTCTGTGGGAGCATACCACGTGTCTTACC TGACTTCGACAAAAGCAACGGATGCTAACGACTTGACATCTGATGGTGTTACTTATCTGTATAAGCTGGTCCCTGGTGTTTGCGAGAGGAGTTTCGGGTT CAAGGTTGCTGAGTTTGCTCAGCTACCATTGTCGTGTGTAAAACGAGCTGCTGAGATGGCTGCCACGCTGGAAATGGCAGTAAGTGGCAAACTACAAGAT GAGAAAAAACAATTGCAGATGGTCGATCAATCAGAAGCTTATCAACTTTTAGAATCCGCAGATATAAAATTTACAGAGACAATCGCCTGCAAGTTCAGGA AAATTATGTTGAGCCTTAAGTTTGCGTTAGAGGGTGGCAACCCTCCGAAAATTTACAAGCTTCTACTGGATGCGAGATGCTCAGTAAGGGAGTTATTGAC GAAGTAG
AA sequence Show only first row Show all	>Lus10027452 pacid=23144554 polypeptide=Lus10027452 locus=Lus10027452.g ID=Lus10027452.BGIv1.0 annot-version=v1.0 MINCRTAWDSFLSGFSKYIEFQAAGQALAALDCLLSLATLSKTKSYVRPTFVDDSEPVQIDICCGRHPVLETILHDTFVPNDTKLNARGEYCQIVTGPNM GGKSCYIRQVALIAIMAQVGSFVPASSCKLHVLDGIYTRMGASDSIQQGRSTFLEELNETSNILQKCTSQSLVIIDELSRGTNTHDGEAIAFATLHHLLE QKRCMVLFVTHYPKISEIEMTFPGSVGAYHVSYLTSTKATDANDLTSDGVTYLYKLVPGVCERSFGFKVAEFAQLPLSCVKRAAEMAATLEMAVSGKLQD EKKQLQMVDQSEAYQLLESADIKFTETIACKFRKIMLSLKFALEGGNPPKIYKLLLDARCSVRELLTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Lus10027452 [exp]	0	1
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10039160 [exp]	5.1	0.7551
AT2G45260			Plant protein of unknown funct...		Lus10024190 [exp]	8.3	0.7738
AT3G12530		PSF2	PSF2 (.1.2)		Lus10000955 [exp]	9.9	0.7396
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10004398 [exp]	16.4	0.6973
AT1G29630			5'-3' exonuclease family prote...		Lus10004608 [exp]	20.6	0.6989
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	27.0	0.7264
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10003615 [exp]	27.1	0.7244
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Lus10010991 [exp]	27.4	0.7338
AT3G01410			Polynucleotidyl transferase, r...		Lus10032166 [exp]	28.5	0.6642
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10016691 [exp]	35.2	0.7066

Compare expression of checked genes

Lus10027452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.