Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25540 248 / 9e-73 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT3G24495 78 / 6e-15 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT4G02070 67 / 1e-11 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G18524 47 / 2e-05 ATMSH2, MSH2 MUTS homolog 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005743 [exp] 361 / 9e-115 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10010010 [exp] 69 / 4e-12 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10033095 [exp] 64 / 2e-10 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10017724 [exp] 63 / 3e-10 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10025030 [exp] 61 / 2e-09 AT4G02070 350 / 7e-104 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10032469 [exp] 46 / 7e-05 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10042967 [exp] 45 / 9e-05 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10007489 [exp] 43 / 0.0006 AT4G17380 1205 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G142900 [exp] 306 / 3e-94 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.006G156314 [exp] 74 / 1e-13 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 74 / 1e-13 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.014G121701 [exp] 71 / 1e-12 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.014G121601 [exp] 61 / 8e-10 AT4G02070 563 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.012G060000 [exp] 44 / 0.0002 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05192 [flax] [poplar] MutS_III MutS domain III
Representative CDS sequence Show only first row Show all	>Lus10027453 pacid=23144575 polypeptide=Lus10027453 locus=Lus10027453.g ID=Lus10027453.BGIv1.0 annot-version=v1.0 ATGATTTTGCCATTGCCCCTTACCTCTGCTGCTCCCAAGCAAACCACAACCACATCGTTACCTCCTCCCTCCTCTGCTCCCACGCAAATCACAACCACGT CATCGTCTCCCCCCTCTGTTGCTCTCAAGCAAAACAAAATCTCAACTCGCGCTCGCAACCACACAACCGTTGCCCTTCCTGCCACACCCTTCGCAAACAT CACTACTTCAGGCAATCCCGCCTCCGACGCCATCATCCAACTCTTCACTGCTCTACAGACAGCCTGCTCGGTCGGAGTCACACGACCAACTCATTCAACG GATCCAGCGGCCAATTGTAGGCAACGAAATCCGAGAAAGTGGGACGGAGTTCACCCTCAACATCAACAGTCAGTCAGCCTCGAGCAACTGGTCTGCCACA CTAATGTCCGAGTCCCAGCAGCTGAGTCGCTACTGGCTTATGCTGGACCTGCATCGAGCGTCCGAGTTGAGAGAATTTCATGCCATTGCTTTAGAGATGG TGATGCACTTGCTGAGGTGACGTCGTTGTATGAGAATTTGGGCGATGATCATAAGTCGGTGGATGATGAGAAGCAAGTTGTAGGGGTGGGAGTGGTGCTG AGTCACAACCGGGCAATTAAGGGAATCATGAACATGCCTGATTTGGCTGTACAAGCATTGGCTTTGACTATTCGTCATCTAAAGCAGTTTGGGTTTAAAA GAATTTTATGCAATGATGATTCGTTCCGGCCTCTATCGAGCAGTATCGAGATGAACCTTTCCGCTAATACACTCCAACAGCTAGAGATTTTAAGGAATAA TTCTGATGGATCTGAGTCTGGATCCTTATTGCACATCCTGAGTAACACTCTTACCATATATGGTTCAAGGCTACTGAGACGATGGGTGACTCATCCTCTA TGTGATAGAAACTTGATACACGCTCGTCTTGATGCGGTTTCTGAAATTGTGGATTCCTTGAGCATAATCTCCATACAAAATGACTTATATTATCTTCTTT CTACGGTATTAACAAATTTGGGAAGATTACCTGATATCCAGCGTGGGATAACAAGAATTTTCCATCGAACTGCTACCCCAAAAGAGGTTGCAAATGCTCG AAAAGCAGTTCAATTGGCGGAGGAGAAATTGGATTCTTTGTTGCCTTTGTATCGGAAGCAGCTTTGTGCTCGGAAGTTGGAATTTATCAGCTTATCTGGA ATCGCTCATTTGATAGAGTTGCCCATAGATGTCAAGGTGTCCTTGAACTGGGTTAAGGTGAACGGTACCAAGAAAACAATTCGATATCACCCTTCCGAAG TATTGACTGCATTAGACCAGTTGTCAGTAGCTTAG
AA sequence Show only first row Show all	>Lus10027453 pacid=23144575 polypeptide=Lus10027453 locus=Lus10027453.g ID=Lus10027453.BGIv1.0 annot-version=v1.0 MILPLPLTSAAPKQTTTTSLPPPSSAPTQITTTSSSPPSVALKQNKISTRARNHTTVALPATPFANITTSGNPASDAIIQLFTALQTACSVGVTRPTHST DPAANCRQRNPRKWDGVHPQHQQSVSLEQLVCHTNVRVPAAESLLAYAGPASSVRVERISCHCFRDGDALAEVTSLYENLGDDHKSVDDEKQVVGVGVVL SHNRAIKGIMNMPDLAVQALALTIRHLKQFGFKRILCNDDSFRPLSSSIEMNLSANTLQQLEILRNNSDGSESGSLLHILSNTLTIYGSRLLRRWVTHPL CDRNLIHARLDAVSEIVDSLSIISIQNDLYYLLSTVLTNLGRLPDIQRGITRIFHRTATPKEVANARKAVQLAEEKLDSLLPLYRKQLCARKLEFISLSG IAHLIELPIDVKVSLNWVKVNGTKKTIRYHPSEVLTALDQLSVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Lus10027453 [exp]	0	1
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Lus10017619 [exp]	4.1	0.7054
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10019443 [exp]	14.3	0.7806
AT3G12530		PSF2	PSF2 (.1.2)		Lus10000955 [exp]	20.3	0.7253
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10033906 [exp]	22.4	0.6970
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030831 [exp]	26.6	0.7264
AT4G08630			unknown protein		Lus10001720 [exp]	31.0	0.7317
AT2G01905		CYCJ18	cyclin J18 (.1)		Lus10031940 [exp]	39.8	0.7062
AT1G29630			5'-3' exonuclease family prote...		Lus10002782 [exp]	48.6	0.7087
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Lus10010991 [exp]	54.2	0.7105
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10004624 [exp]	56.7	0.7082

Compare expression of checked genes

Lus10027453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.