Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23730 246 / 1e-80 EFO2, RUP2 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52250 218 / 2e-69 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G53090 154 / 1e-42 SPA4 SPA1-related 4 (.1.2) AT3G15354 146 / 7e-40 SPA3 SPA1-related 3 (.1) AT2G32950 143 / 6e-39 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G46340 135 / 6e-36 SPA1 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) AT4G11110 134 / 2e-35 SPA2 SPA1-related 2 (.1) AT1G15440 52 / 1e-07 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT1G49040 48 / 3e-06 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) AT1G29260 47 / 4e-06 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005742 [exp] 352 / 4e-123 AT5G52250 226 / 3e-72 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10035332 [exp] 144 / 2e-39 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029990 [exp] 144 / 3e-39 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10043323 [exp] 143 / 7e-39 AT3G15354 906 / 0.0 SPA1-related 3 (.1) Lus10019475 [exp] 142 / 2e-38 AT3G15354 992 / 0.0 SPA1-related 3 (.1) Lus10033942 [exp] 121 / 3e-31 AT4G11110 766 / 0.0 SPA1-related 2 (.1) Lus10032358 [exp] 91 / 2e-20 AT4G11110 784 / 0.0 SPA1-related 2 (.1) Lus10040449 [exp] 49 / 2e-06 AT1G49040 1816 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10023563 [exp] 49 / 2e-06 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G140200 [exp] 256 / 3e-84 AT5G23730 427 / 3e-149 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G143200 [exp] 254 / 7e-84 AT5G23730 395 / 2e-137 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G119500 [exp] 147 / 4e-40 AT3G15354 982 / 0.0 SPA1-related 3 (.1) Potri.014G159300 [exp] 145 / 6e-40 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G399600 [exp] 140 / 1e-37 AT3G15354 1003 / 0.0 SPA1-related 3 (.1) Potri.014G095300 [exp] 139 / 3e-37 AT2G46340 846 / 0.0 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) Potri.003G137100 [exp] 133 / 3e-35 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.001G094500 [exp] 132 / 4e-35 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.004G002700 [exp] 131 / 6e-35 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G021700 [exp] 129 / 1e-34 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10027454 pacid=23144484 polypeptide=Lus10027454 locus=Lus10027454.g ID=Lus10027454.BGIv1.0 annot-version=v1.0 ATGGAGCGTCGACTATGGTTGTTTCGGCCTGTAGGCGCCAGCTGCGGTGTGGTCGGCGGCGGCGCCACGGCGGTTCTCTGCGCCTCGGGTTCCGACGACG GGACTACCCACGTGTGGGACCCGCGATGCGAGGGAGGGGAATGCGTGGCTGTAATACGGCCAAGCGGGTCCGGATCCGCTGTATGCTGCGTGGAGTTCAA TCGTTCTCGTGGGACGACGCTAGCCGTGGGATGCGCTGACCGGAAGGTGTACGTGTACGACTGCCGCATGCTGGTCCACCCTCTCCTTACCATGGGCGGG CACACCAAAACGGTAACGTACGTCAAGTTCCTCGACGAAACGACTCTGGTCTCCGCGTCTATAGACGGGAGCTTGAAGCTGTGGGATCTGGGTAACCACT CGGTCGAACCGGTTCGGACCTACCGCGGACATTCCAACGGTAGAAACTTCGTAGGGTTATCGGTTTGGAATGGGGGCGGGTTGCTGGGTTGCGGTTCGGA GAGTAACCAGGCGTTCGTGTATGATCGGAGGTGGGGCGAACCGATTTGGATGCATGGTTTCAAACCGGTTGAACCAAGCACCGACGGGTTCGTGAGCAGT GTGTGCTGGAAGCAAAGTGTGGACGACAATCTCGACAGCAGACAATGTACGTTCGTGGCCGGCGGATCGGATGGAACGTTGCGAGTTTTCGAAGGGATGA AGAAGAAGATGACGGCGCCGGCTACTTCTTCCGTTGCGCCGACGAACACATGA
AA sequence Show only first row Show all	>Lus10027454 pacid=23144484 polypeptide=Lus10027454 locus=Lus10027454.g ID=Lus10027454.BGIv1.0 annot-version=v1.0 MERRLWLFRPVGASCGVVGGGATAVLCASGSDDGTTHVWDPRCEGGECVAVIRPSGSGSAVCCVEFNRSRGTTLAVGCADRKVYVYDCRMLVHPLLTMGG HTKTVTYVKFLDETTLVSASIDGSLKLWDLGNHSVEPVRTYRGHSNGRNFVGLSVWNGGGLLGCGSESNQAFVYDRRWGEPIWMHGFKPVEPSTDGFVSS VCWKQSVDDNLDSRQCTFVAGGSDGTLRVFEGMKKKMTAPATSSVAPTNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23730		EFO2, RUP2	REPRESSOR OF UV-B PHOTOMORPHOG...		Lus10027454 [exp]	0	1
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10001712 [exp]	4.2	0.8329
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10008528 [exp]	4.5	0.8829
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10014731 [exp]	5.7	0.8664
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10030493 [exp]	5.8	0.8665
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Lus10005583 [exp]	5.9	0.8339
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10001789 [exp]	7.3	0.8383
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10005248 [exp]	9.4	0.8331
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10029778 [exp]	9.9	0.8143
AT2G24290			Protein of unknown function (D...		Lus10019053 [exp]	10.6	0.7879
AT1G45130		BGAL5	beta-galactosidase 5 (.1)		Lus10024292 [exp]	11.0	0.8043

Compare expression of checked genes

Lus10027454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.