Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08070 305 / 4e-95 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18840 299 / 1e-94 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G44880 297 / 9e-94 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G29230 298 / 1e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15300 284 / 7e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G56690 284 / 2e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 277 / 4e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31430 270 / 4e-83 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G45350 270 / 5e-83 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 271 / 1e-82 SLO1 SLOW GROWTH 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005741 [exp] 380 / 3e-130 AT1G06150 158 / 2e-45 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10003422 [exp] 304 / 5e-96 AT2G44880 679 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004052 [exp] 302 / 6e-95 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10039974 [exp] 300 / 1e-94 AT1G06150 612 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10019797 [exp] 299 / 6e-94 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 300 / 6e-93 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008825 [exp] 293 / 4e-92 AT1G06150 614 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10014113 [exp] 293 / 1e-91 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 290 / 2e-90 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G140400 [exp] 675 / 0 AT3G29230 398 / 2e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G258766 [exp] 318 / 5e-102 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.008G121400 [exp] 316 / 2e-101 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G046200 [exp] 316 / 1e-100 AT2G44880 676 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G125500 [exp] 312 / 4e-99 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G086100 [exp] 305 / 4e-97 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G265200 [exp] 303 / 6e-97 AT3G29230 364 / 9e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G207500 [exp] 304 / 2e-96 AT5G37570 602 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G040100 [exp] 306 / 2e-95 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G088600 [exp] 302 / 2e-94 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027455 pacid=23144476 polypeptide=Lus10027455 locus=Lus10027455.g ID=Lus10027455.BGIv1.0 annot-version=v1.0 ATGGCTGCAAACTTCCAACTGACGATCCCCAGTCTGCTTCCAAAATGCACATTTCACCATCTGAAACAAATCCAAGCCTTACTAATCACAACCACCCTTG CCCAGAACATCCCGATCTTCTCCAAGTTTCTCCGAAGGAGCACCGAATTCGGCACAATGGGGTATCCGGATACGATATTCTCTCAATTGGGTGAGAATCT CTTAGACCATACAATCCTATGGAACGTCATGATCAGAGGTTACTCGTTCAATGGTCCAGCTGAGATCACCTTGCAACTGTTCGATGAAATGCTTCAAAGA GGATTAAAGCCCCACAACTACACATACCCGTATGTGATTAGCTCATGTTGCCAGCTGGGGTTGTATAGGAGAGCCAAGATCGTCCATTGCCAGATCGTGA AGTCTGGGTTTGGCTCAAATCCTTCGATTTCCAGTTCCCTTTTCAACATGTACTTGAAAATGACGGACTCTGATTCGAGGTTAAGTAATGCACGGAAGGT ATTCGATGAAATGCCTGTAAGACCAGTGGAACTTTGTAACCGGCTGATATCCGAGTATGTAAACTCCGGAGATGTCGGATCAGCAAGAGAGTTGTTTGAT GAGATGACAGAGAGAGACGTTGTTTCCTGGAACTCCATGATTTCAGGTTATTCAAAAATCGGAGAAGTAGCCAATGCAAGGGAACTGTTCGACTCGATGC CAGAAAAGAATGTCATTTCCTGGACTTCCATGATTGGTGCATACTCCGATTCAGGGAAGCTTGAAACAGCGATACAGGTGTTCGAGGAAATGCCTATAAG GAACGTGGTATCATGGAACTCAATGATCTCAAGCTACATCAACCATAACAAGTTTGCAGAAGCATTGGATCTTTTCTTTCAGATGCAGTCAGCAGGGTTT TTGCCTAACGGTCACACCTTTGTATCTGTTCTTCTAGCTTGTTCTAAGCTAGGTAACTTGGAGTTCGGAAAATACGTACACTACCTGATACGAGATTGGT CACAACTGCAAGTCATTGTGGGGACCGCCCTAGTCAAAATGTACGCTCAGTGTGGAGACGTGGATCGAAGCTTCAATGTCTTTACAAAGATCGGGAACAA GGATGTGTTCTGCTGGAATGTAATGATCAGGTCACTAGCCATCAATGGAAGAGCAGAAGATGCCGTCAAGCTTTTCCGGTCGATGGAATTGAAGCCAAAC GATTTCAGCTTCACGAGCGTGTTGTTCGCTTGTAGTCACGGAGGTTTGCTAGAACAAGGTCGCGAGATTTTTAGTACTATGGTCAGACCGAAGATTGAAC ATTATGGTTGTATGGTTGATTTGCTATGTCGAAACGGTCAGGTTGATGAGGCACAGAGTTTGGTGGAAGGTATGCCGTATAAGGCTGATACTGCCATGTT GGGAAGTTTGCTTTCGGGATGCAAAGCAAGAAGTGATTTGAAGTCTGCTGAGATTGTAGGGAGGAGAGCTGTCGAGTCGATGGTGGATGAACCAGGAGTT TATGCGCTTTGGTCTAGTATCCATGCTTCGGTGGGTCAATGGTCCGAGGCTCGAGAAGCTCGAGAAATGATGGAAGAGATGAACACTCTCAAGACCACCG GTACAAGTAACTATCATGGTGGGGGTAGTAGGCCTGATCTCAGGCCGTAG
AA sequence Show only first row Show all	>Lus10027455 pacid=23144476 polypeptide=Lus10027455 locus=Lus10027455.g ID=Lus10027455.BGIv1.0 annot-version=v1.0 MAANFQLTIPSLLPKCTFHHLKQIQALLITTTLAQNIPIFSKFLRRSTEFGTMGYPDTIFSQLGENLLDHTILWNVMIRGYSFNGPAEITLQLFDEMLQR GLKPHNYTYPYVISSCCQLGLYRRAKIVHCQIVKSGFGSNPSISSSLFNMYLKMTDSDSRLSNARKVFDEMPVRPVELCNRLISEYVNSGDVGSARELFD EMTERDVVSWNSMISGYSKIGEVANARELFDSMPEKNVISWTSMIGAYSDSGKLETAIQVFEEMPIRNVVSWNSMISSYINHNKFAEALDLFFQMQSAGF LPNGHTFVSVLLACSKLGNLEFGKYVHYLIRDWSQLQVIVGTALVKMYAQCGDVDRSFNVFTKIGNKDVFCWNVMIRSLAINGRAEDAVKLFRSMELKPN DFSFTSVLFACSHGGLLEQGREIFSTMVRPKIEHYGCMVDLLCRNGQVDEAQSLVEGMPYKADTAMLGSLLSGCKARSDLKSAEIVGRRAVESMVDEPGV YALWSSIHASVGQWSEAREAREMMEEMNTLKTTGTSNYHGGGSRPDLRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10027455 [exp]	0	1
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021069 [exp]	2.0	0.8607
AT1G31790			Tetratricopeptide repeat (TPR)...		Lus10035697 [exp]	3.5	0.8168
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10022702 [exp]	3.5	0.8251
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	3.5	0.8271
AT5G66360		DIM1B	adenosine dimethyl transferase...		Lus10041797 [exp]	5.3	0.7891
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002211 [exp]	6.3	0.8051
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10040504 [exp]	8.4	0.8119
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10003857 [exp]	9.4	0.7919
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10022124 [exp]	9.7	0.6984
AT2G41475			Embryo-specific protein 3, (AT...		Lus10043273 [exp]	10.2	0.7664

Compare expression of checked genes

Lus10027455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.