Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005739 [exp] 110 / 1e-30 AT5G52260 186 / 4e-58 myb domain protein 19 (.1) Lus10027456 [exp] 66 / 1e-13 AT5G52260 184 / 2e-56 myb domain protein 19 (.1) Lus10005740 [exp] 65 / 5e-13 AT5G52260 194 / 3e-61 myb domain protein 19 (.1) Lus10027458 [exp] 59 / 4e-11 AT4G25560 190 / 4e-59 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Lus10039213 [exp] 54 / 2e-09 AT4G25560 195 / 4e-61 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027457 pacid=23144603 polypeptide=Lus10027457 locus=Lus10027457.g ID=Lus10027457.BGIv1.0 annot-version=v1.0 ATGTTCGCCGAGTGGCTATCGGTGGACGGCTTTGCCGCTGCCACGTCGGCTGCCGGACCATTGTTTTGTTCTGCTGATGAGGGTTTCGCTTCTGGAAGTG ACGAGTTCGGCCTTGACGTCCCGGGCAGCGATGTGTCAGGCTCCAGTGATATGTTCTCGGCGTCGCAGTTCGGTTTTGGAGATCCGGGTATGGATAGTGC TGATCAGTTCGTTGAGTTCTGCAGCGACTTCCATTTTGACCATTGGGAATCACCGCTCGTTGCTCGCTATACGATGTTACAATTTCGTCATTGCATTGTG ACCAATGCGTTGTTCGTCGCTGTTGCGATTGCCGCTGTTGCGATTGCCGCTGTTCTTGCTCAGAAAATCCTACTGCGAGGGGAAAAACAAACTCCTACAA CGAGGGGATAA
AA sequence Show only first row Show all	>Lus10027457 pacid=23144603 polypeptide=Lus10027457 locus=Lus10027457.g ID=Lus10027457.BGIv1.0 annot-version=v1.0 MFAEWLSVDGFAAATSAAGPLFCSADEGFASGSDEFGLDVPGSDVSGSSDMFSASQFGFGDPGMDSADQFVEFCSDFHFDHWESPLVARYTMLQFRHCIV TNALFVAVAIAAVAIAAVLAQKILLRGEKQTPTTRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027457 [exp]	0	1
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Lus10005733 [exp]	1.0	0.9962
					Lus10014650 [exp]	1.4	0.9869
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	4.2	0.9787
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10024186 [exp]	4.2	0.9398
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	4.9	0.9787
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	5.5	0.9787
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	6.0	0.9787
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10005476 [exp]	7.0	0.9630
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013134 [exp]	7.5	0.9520
AT5G51490			Plant invertase/pectin methyle...		Lus10027204 [exp]	8.4	0.8758

Compare expression of checked genes

Lus10027457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.