Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23750 155 / 8e-48 Remorin family protein (.1.2) AT3G61260 148 / 5e-45 Remorin family protein (.1) AT3G48940 139 / 5e-42 Remorin family protein (.1) AT2G45820 129 / 7e-38 Remorin family protein (.1) AT1G63295 78 / 2e-18 Remorin family protein (.1) AT1G67590 56 / 4e-09 Remorin family protein (.1.2) AT1G30320 55 / 8e-09 Remorin family protein (.1) AT2G41870 54 / 1e-08 Remorin family protein (.1) AT3G57540 52 / 4e-08 Remorin family protein (.1) AT1G53860 47 / 3e-06 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039215 [exp] 278 / 4e-96 AT3G61260 196 / 7e-64 Remorin family protein (.1) Lus10018840 [exp] 142 / 9e-43 AT3G61260 206 / 1e-67 Remorin family protein (.1) Lus10017811 [exp] 134 / 1e-39 AT3G61260 199 / 5e-65 Remorin family protein (.1) Lus10014785 [exp] 129 / 1e-37 AT3G61260 177 / 1e-56 Remorin family protein (.1) Lus10001477 [exp] 125 / 7e-36 AT5G23750 162 / 3e-50 Remorin family protein (.1.2) Lus10008477 [exp] 122 / 3e-34 AT5G23750 154 / 5e-47 Remorin family protein (.1.2) Lus10030379 [exp] 114 / 4e-32 AT3G61260 178 / 4e-57 Remorin family protein (.1) Lus10008014 [exp] 112 / 7e-32 AT5G23750 158 / 5e-50 Remorin family protein (.1.2) Lus10024514 [exp] 90 / 7e-23 AT5G23750 113 / 5e-32 Remorin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G081300 [exp] 165 / 7e-52 AT3G61260 199 / 4e-65 Remorin family protein (.1) Potri.002G157700 [exp] 155 / 6e-48 AT3G61260 167 / 2e-52 Remorin family protein (.1) Potri.015G143600 [exp] 150 / 7e-46 AT5G23750 111 / 1e-30 Remorin family protein (.1.2) Potri.003G124400 [exp] 135 / 3e-40 AT5G23750 129 / 6e-38 Remorin family protein (.1.2) Potri.012G140800 [exp] 134 / 2e-39 AT5G23750 98 / 2e-25 Remorin family protein (.1.2) Potri.001G107000 [exp] 109 / 5e-30 AT5G23750 55 / 2e-09 Remorin family protein (.1.2) Potri.008G178300 [exp] 60 / 1e-10 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.008G144300 [exp] 57 / 2e-09 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.006G053200 [exp] 55 / 3e-09 AT3G57540 196 / 2e-61 Remorin family protein (.1) Potri.016G054400 [exp] 55 / 5e-09 AT2G41870 206 / 7e-66 Remorin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10027460 pacid=23144593 polypeptide=Lus10027460 locus=Lus10027460.g ID=Lus10027460.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAAGAAGCTAAGAAGCTCGTCCCTGAATCCCCTGCCTCCGCCGTCGTCGAACCTCCAAAGGATGTAGCTGAGGAAAAATCCGTAATTCCAA CCCCTCCTTCTGAAGACAAGTCTGATCCTAAACCTGATGATGATTCCTCCAAGGCCATCGTCCCCCTCCAAAAGGAAGCAGAGCCAGTTTCAGAGGAGGC AAAACCTGTTGAGGGATCTGTCAATCGAGATTTGGAGCTGGCCAGAGTAGAAACAGAGAAGAGGTTGTCTTTCATCAAAGCTTGGGAAGAGAGTGAGAAG AGCAAAGCTGAGAACAAGGCTCACAAGAAGGTATCTGCAATTGAGTCATGGGAGAACAGCAAGAAAGCAGCTGTCGAGGCACAGCTCAGACAGTTTGAGG AAAAACTGGAGAAGCAGAAGGCAGAGTACGCAGAGAAGATGAAGAACAAGATCGCCGAAATCCACAAGCTAGCCGAGGAAAAGAGGGCCACGATCGAAGC CAAACGAGGCGAAGATATGCTAAAGGCGGAGGAGAGGGCTGCAAAGTACCGTGCTACAGGGACGACTCCCAAGAACCCACTTGGCTTCGGTTGCTTCAAA TAA
AA sequence Show only first row Show all	>Lus10027460 pacid=23144593 polypeptide=Lus10027460 locus=Lus10027460.g ID=Lus10027460.BGIv1.0 annot-version=v1.0 MAEEEAKKLVPESPASAVVEPPKDVAEEKSVIPTPPSEDKSDPKPDDDSSKAIVPLQKEAEPVSEEAKPVEGSVNRDLELARVETEKRLSFIKAWEESEK SKAENKAHKKVSAIESWENSKKAAVEAQLRQFEEKLEKQKAEYAEKMKNKIAEIHKLAEEKRATIEAKRGEDMLKAEERAAKYRATGTTPKNPLGFGCFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61260			Remorin family protein (.1)		Lus10027460 [exp]	0	1
AT3G61260			Remorin family protein (.1)		Lus10039215 [exp]	1.0	0.8627
AT2G33205			Serinc-domain containing serin...		Lus10023690 [exp]	3.3	0.7860
AT5G23870			Pectinacetylesterase family pr...		Lus10039238 [exp]	4.0	0.8006
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10019925 [exp]	5.2	0.8116
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10014661 [exp]	6.0	0.7757
					Lus10019921 [exp]	7.2	0.8284
AT2G43430		GLY1, GLX2-1	GLYOXALASE II, glyoxalase 2-1 ...		Lus10033662 [exp]	7.5	0.7737
					Lus10028745 [exp]	9.7	0.7423
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	12.2	0.7869
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10019916 [exp]	13.5	0.7827

Compare expression of checked genes

Lus10027460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.