Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52280 550 / 0 Myosin heavy chain-related protein (.1) AT1G63300 436 / 1e-137 Myosin heavy chain-related protein (.1) AT5G41140 405 / 1e-126 Myosin heavy chain-related protein (.1.2) AT1G22060 129 / 3e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039218 [exp] 1538 / 0 AT5G52280 618 / 0.0 Myosin heavy chain-related protein (.1) Lus10038860 [exp] 1016 / 0 AT1G63300 614 / 0.0 Myosin heavy chain-related protein (.1) Lus10014980 [exp] 693 / 0 AT1G63300 537 / 9e-179 Myosin heavy chain-related protein (.1) Lus10024517 [exp] 326 / 2e-96 AT5G41140 482 / 9e-154 Myosin heavy chain-related protein (.1.2) Lus10008012 [exp] 312 / 2e-91 AT5G41140 473 / 3e-150 Myosin heavy chain-related protein (.1.2) Lus10001481 [exp] 291 / 1e-83 AT5G41140 476 / 1e-150 Myosin heavy chain-related protein (.1.2) Lus10008482 [exp] 247 / 3e-68 AT1G63300 406 / 4e-124 Myosin heavy chain-related protein (.1) Lus10033461 [exp] 145 / 4e-35 AT1G22060 978 / 0.0 unknown protein Lus10020915 [exp] 133 / 2e-31 AT1G22060 985 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143800 [exp] 814 / 0 AT5G52280 594 / 0.0 Myosin heavy chain-related protein (.1) Potri.012G141200 [exp] 515 / 3e-167 AT5G52280 322 / 7e-95 Myosin heavy chain-related protein (.1) Potri.003G124600 [exp] 476 / 4e-152 AT1G63300 810 / 0.0 Myosin heavy chain-related protein (.1) Potri.001G106700 [exp] 325 / 1e-96 AT1G63300 603 / 0.0 Myosin heavy chain-related protein (.1) Potri.005G170066 [exp] 135 / 6e-32 AT1G22060 1031 / 0.0 unknown protein Potri.002G091700 [exp] 134 / 2e-31 AT1G22060 1546 / 0.0 unknown protein Potri.008G029800 [exp] 89 / 1e-17 AT1G22060 117 / 5e-26 unknown protein Potri.006G120400 [exp] 79 / 8e-15 AT1G22060 121 / 2e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027462 pacid=23144442 polypeptide=Lus10027462 locus=Lus10027462.g ID=Lus10027462.BGIv1.0 annot-version=v1.0 ATGTTCAAGTCATGGAGGAGCAAGGAGAAGAAGCTCAAAGCTGTGTTTCAGCTCCAGTTTCAAGCAACGGATGTGCCACAGTTGAAGAAGCCTGCTCTAA CTGTGTCATTAGTGCCGGAGGAAGTTGGGAAACCCACATTCAAGCTAGAGAAAACTACGGTTCAGGAGGGAACCTGCTTGTGGGAAAATCCTGTATATGT AACAGTGAAGCTAGTAAGGGAGCCCAAAACAGGGAAGATTCACGAGAAAATATATCATTTCATCGTCTCTAGTGGATCATCCAAGAAAGATTACCTTGGA GAATCTTCAATTGATTTCGCAGATTTCGCGGATGAAGCTGAACCAATTACTGTCTCTCTGCCACTGAAGTTTGCAAATTCTGGAGCTGTTTTACATATTA CAATTCAGAAGATCCAAGGAGGCGTTGAACAAAGATACAAGGGAAGTACTGAGGATTTTCGTGATGGAAGGTTAACAAACCAATTGAGCAATGATCGATC AGAGGACTTAGATGATTATAAAGAAGATGACAACTTCAAAGCATCTATTGGCTCTACGGACAGCTTTAAATCAATAGGGAGACAAAATTCCATGCCTCAG AGGCCACAAATTGTTGTTAATTCAGCAACAAAGAACCGCCTACACAGAAGAACTAGCACAGAGTGGTCAATAGGGTCAGCATCCGACGGGAGTTTAGTTG ATTCATCAAACAGCCCTGAGGATGAATCAGTTCAGAAGCTTAAGAGTGAAATTTTCAACCTAATGCGTCAGCATGAGCTATCAGAAATGGAGACTCAGAC ACTTCGAAAACAACTGACAAAGGAGACCAAAAGAGCGCAAGATTTATCGAGGGAAGTTATGGACATCAAAGAAGATAGAGATGCACTTGAGAGAGAATGT GAACAGTTGAGGTTCTCAAGGAAGAATATAGAAGCAGAGGCTCTGGACCGAGTACGAGCTGTGAATGAGGGGTCGCGGGTTAAGCTGGAAGAAATGAGGA AGGAGCTTAACCATGAAAAGGAGTTGAAGTTCAATCTTGAGTTGCAACTGCAGAAAACACAAGAATCAAACTCGGAGTTGATTCTAGCTGTGCAGGACCT TGATGATATGTTGAAGGAGAAAAATATAGAATCAAGTGAGGATGATAAACAATTCCAGTGCCAAAACTGCAGATGTAGTACAGAAGCCAATGAAGGCCAT CAAGCAGAATCTGCAAACACGAAATTAACTGGGGATGGAAATGATGCCAATACCAATGAAGTAAACTTGCTTAAGGAACAGATAACTAATCTTTCTGATG AGATAGAGGCCTACAGAGAAAGCAGGGAAAGGCTGGAAAAGTACATAGAGCAACTCACACAAGATTATGAAGATTTGAAACAAGAAAACCAAGGCATCTC GTCTGGGTTAGAGCAGAATCGGCAGGAAACACTGGAAGCAGAGGGTGAATGCTCCAGATATCTGGCTGCAATTGAAGAATACGAATCACAGCTGGAGAGG CTAGAACAGAAATTAAGAGAACAGACACAAGAACAGTCAAAAGCATTGCTCCAGATCAATGAACTTGAAGGTCAAGTAAAATCATTGGAGCAGGAACTCC AGAATCAGGCAGAGGGATTTCACAAACATCTGGATGATATTACTCGGGCGAAATTTGAGGAGGAGCAAAGAGCGATTCGTGCAGAAGAGGCCTTGAGGAA GTCAAGATGGAAAAATGCCAGCACAGCAGAGCGACTTCAGGACGATTTTAGAAAGCTGTCACAAGAAATGGCTGGTAAAATTGACGAGAATGAGAAGCTT ATGGTGAATGCTGTCACGGAATCAGAAAAGCTCCGTGAAGAGAATCGACTCATAGCAGAAAAGCTTAACGAAGCTAATGAAGAGATTGAACTAATAAAAG ACCAGACGAAAGTTAGGACGGAAGAGCTATCAACTCAACTTGATCTCAGGACAAAAATGATAGAAGAGATTTCATCGGAAGCAGAAGAGAAGTCAATGCA GCTGGAAAATTTGCAGAAGCAAGAAAAAGAAAGGCAAGAAGCTTTCACAAGGGAAATCCAAGTGCTGAAAGCCAGAATTGAGGAACTCACTGTAGCAGGC GCCTCCAGATGGATGGAAGAACATGAAGAAAACTCTAAGGATGAGCAGGATCAAGCAAACGCATCGCTTGCAAAAACAACATTGCAAAGAAATGAACTGG AGACAAAATATTCATCAGCGAAAAAAGAAGCAGAAAAGGCGGTACAAGAGTTGGAAAATTTGAGATCACAGAAGGATGAAAGGGATATAATGCTCAATAC ACTGCAATTGGACATAATAGAGCTCAGAGATCAACACAAGAAGTTAACGCATAGTCTCTCAGAAGAAGAGTTGGAGAAAGAGAAACTGCAGAAGCAAATA CTTCGGTTAAAAGGGGAGCTACTGAAGAAGGAAGATGCTGCAGATAAATGGGGAGTAAAGACATGCACAGAGCAAGAACTAGACAACTGCAATCTGACAG AAATACTGAGCAAGATGGCGCAACTCAAGGAAAGGAACAAACGCATGGAAGGTGAATTGAAAGAAATGGAGGTGAGATATTCAGATATAAGCCTCAAGTT TGCAGAGGTAGAGGGAGAAAGGCAGCAGCTGGTTATGACTGTACGCAACCTGAAAAACAGTAACAAGAACTAG
AA sequence Show only first row Show all	>Lus10027462 pacid=23144442 polypeptide=Lus10027462 locus=Lus10027462.g ID=Lus10027462.BGIv1.0 annot-version=v1.0 MFKSWRSKEKKLKAVFQLQFQATDVPQLKKPALTVSLVPEEVGKPTFKLEKTTVQEGTCLWENPVYVTVKLVREPKTGKIHEKIYHFIVSSGSSKKDYLG ESSIDFADFADEAEPITVSLPLKFANSGAVLHITIQKIQGGVEQRYKGSTEDFRDGRLTNQLSNDRSEDLDDYKEDDNFKASIGSTDSFKSIGRQNSMPQ RPQIVVNSATKNRLHRRTSTEWSIGSASDGSLVDSSNSPEDESVQKLKSEIFNLMRQHELSEMETQTLRKQLTKETKRAQDLSREVMDIKEDRDALEREC EQLRFSRKNIEAEALDRVRAVNEGSRVKLEEMRKELNHEKELKFNLELQLQKTQESNSELILAVQDLDDMLKEKNIESSEDDKQFQCQNCRCSTEANEGH QAESANTKLTGDGNDANTNEVNLLKEQITNLSDEIEAYRESRERLEKYIEQLTQDYEDLKQENQGISSGLEQNRQETLEAEGECSRYLAAIEEYESQLER LEQKLREQTQEQSKALLQINELEGQVKSLEQELQNQAEGFHKHLDDITRAKFEEEQRAIRAEEALRKSRWKNASTAERLQDDFRKLSQEMAGKIDENEKL MVNAVTESEKLREENRLIAEKLNEANEEIELIKDQTKVRTEELSTQLDLRTKMIEEISSEAEEKSMQLENLQKQEKERQEAFTREIQVLKARIEELTVAG ASRWMEEHEENSKDEQDQANASLAKTTLQRNELETKYSSAKKEAEKAVQELENLRSQKDERDIMLNTLQLDIIELRDQHKKLTHSLSEEELEKEKLQKQI LRLKGELLKKEDAADKWGVKTCTEQELDNCNLTEILSKMAQLKERNKRMEGELKEMEVRYSDISLKFAEVEGERQQLVMTVRNLKNSNKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63300			Myosin heavy chain-related pro...		Lus10027462 [exp]	0	1
AT5G52280			Myosin heavy chain-related pro...		Lus10039218 [exp]	1.0	0.9231
AT4G16444			unknown protein		Lus10035992 [exp]	7.5	0.7838
AT5G39020			Malectin/receptor-like protein...		Lus10025544 [exp]	12.5	0.8346
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10022533 [exp]	14.7	0.8245
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10035572 [exp]	22.8	0.8148
AT5G22580			Stress responsive A/B Barrel D...		Lus10020555 [exp]	28.8	0.8147
AT1G51990			O-methyltransferase family pro...		Lus10002668 [exp]	39.8	0.7991
AT2G27770			Plant protein of unknown funct...		Lus10023869 [exp]	40.4	0.7904
AT3G26880			Plant self-incompatibility pro...		Lus10038163 [exp]	42.6	0.7992
AT4G19510			Disease resistance protein (TI...		Lus10008209 [exp]	42.7	0.7927

Compare expression of checked genes

Lus10027462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.