Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50960 549 / 0 ATNBP35, NBP35 nucleotide binding protein 35 (.1) AT4G19540 123 / 2e-32 INDH, INDL IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) AT3G24430 111 / 7e-27 HCF101 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039219 [exp] 689 / 0 AT5G50960 566 / 0.0 nucleotide binding protein 35 (.1) Lus10036588 [exp] 139 / 7e-41 AT5G50960 99 / 3e-26 nucleotide binding protein 35 (.1) Lus10018779 [exp] 124 / 7e-32 AT4G19540 401 / 9e-140 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10024867 [exp] 124 / 8e-32 AT4G19540 402 / 1e-139 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10043252 [exp] 113 / 2e-27 AT3G24430 817 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10019395 [exp] 113 / 2e-27 AT3G24430 745 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10019468 [exp] 55 / 7e-09 AT4G19540 117 / 2e-32 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10011951 [exp] 52 / 5e-08 AT4G19540 111 / 3e-30 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10025895 [exp] 49 / 2e-06 AT4G19540 107 / 9e-28 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G336900 [exp] 600 / 0 AT5G50960 571 / 0.0 nucleotide binding protein 35 (.1) Potri.005G220500 [exp] 128 / 2e-34 AT4G19540 414 / 1e-146 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.002G042600 [exp] 125 / 2e-33 AT4G19540 422 / 5e-150 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.018G076600 [exp] 114 / 9e-28 AT3G24430 835 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF10609 [flax] [poplar] ParA NUBPL iron-transfer P-loop NTPase CL0023 [flax] [poplar] P-loop_NTPase PF02374 [flax] [poplar] ArsA_ATPase Anion-transporting ATPase
Representative CDS sequence Show only first row Show all	>Lus10027463 pacid=23144579 polypeptide=Lus10027463 locus=Lus10027463.g ID=Lus10027463.BGIv1.0 annot-version=v1.0 ATGGATAACGGCGAAGTTCCTGAAAACGCCAACGACAATTGTCCAGGTACTCAATCGGAACTGGCGGGAAAAGCAGCTGACTGTCAAGGATGCCCTAATC AGGAAGCTTGTGCTACTGCTCCTAAGGGACCCGATCCAGACTTGGTTGCCATTGCTGAGAGAATGGCAACTGTAAAGCACAAGATCTTAATTTTATCAGG AAAGGGCGGTGTTGGCAAGAGTACTTTTTCTGCCCAGCTCTCGTTTGCACTAGCAGCCATGGACTTCCAGGTTGGTCTCTTGGACGTTGATATCTGTGGG CCCAGCATCCCTAAGATGCTTGGACTGGAAGGTCAAGCTATTCACCAGAGCAACCTCGGATGGTCCCCAGTATACGTCGAATCGAACCTTGGGGTAATGT CAATTGGTTTCATGCTCCCAAATCCTGATGAAGCTGTCATATGGAGGGGCCCCCGCAAGAATGCAATCATCAAACAATTTGTGAAGGATGTCTATTGGGG AGAGCTCGATTTTCTAGTGGTCGATGCTCCACCAGGAACCTCAGACGAGCACATCTCACTAGTTCAATTTCTCCAGGCAACCGGGATAGACGGTGCAATC ATCGTCACCACACCGCAACAAGTCTCGCTAATTGACGTTAGGAAAGAAGTGAGCTTTTGCAAGAAGGTTGGGGTGGAGGTCCTCGGGGTTGTGGAGAACA TGAGCGGGTTGTGCCAGCCATTGACAGACCTCAAGTTTTTGAAGCTCGGAGAAGCAGTTGAACAGACCGATGTGACAGAGAGGATTCTGGAGTTGATGAG AGAGAAGGCCCCGGAAATGCTGGACTTGGTAGTGTACAGTGAGGTGTTTGACAGTAGTGCTGGTGGGGCGGCATCAATGTGTAGGGAGATGGGGGTTCCT TTCCTGGGGAAGGTACCTTTGGATCCACAGCTTTGTAAGGCCGCTGAGGAAGGTCGATCCTGTTTTGCTGATCAGAGATGCAGCGTCAGTGCTCCGGCAC TGAAGAGTATGATTGAGAAACTAATTTCGGCAAAAGAGTGGAATCAGGAAGAATCGCAGCACAAGGAGAATGGTTATGGCGCATAA
AA sequence Show only first row Show all	>Lus10027463 pacid=23144579 polypeptide=Lus10027463 locus=Lus10027463.g ID=Lus10027463.BGIv1.0 annot-version=v1.0 MDNGEVPENANDNCPGTQSELAGKAADCQGCPNQEACATAPKGPDPDLVAIAERMATVKHKILILSGKGGVGKSTFSAQLSFALAAMDFQVGLLDVDICG PSIPKMLGLEGQAIHQSNLGWSPVYVESNLGVMSIGFMLPNPDEAVIWRGPRKNAIIKQFVKDVYWGELDFLVVDAPPGTSDEHISLVQFLQATGIDGAI IVTTPQQVSLIDVRKEVSFCKKVGVEVLGVVENMSGLCQPLTDLKFLKLGEAVEQTDVTERILELMREKAPEMLDLVVYSEVFDSSAGGAASMCREMGVP FLGKVPLDPQLCKAAEEGRSCFADQRCSVSAPALKSMIEKLISAKEWNQEESQHKENGYGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Lus10027463 [exp]	0	1
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030601 [exp]	5.4	0.8831
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10021154 [exp]	5.9	0.8584
AT5G44860			unknown protein		Lus10036220 [exp]	6.6	0.8615
AT3G26420		ATRZ-1A	RZ-1A, RNA-binding (RRM/RBD/RN...		Lus10020953 [exp]	13.4	0.8413
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10031011 [exp]	14.1	0.8651
AT5G42060			DEK, chromatin associated prot...		Lus10032409 [exp]	15.0	0.8424
AT5G62440			Protein of unknown function (D...		Lus10002053 [exp]	16.0	0.8267
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10013537 [exp]	19.4	0.8626
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10040519 [exp]	21.7	0.8428
AT4G40042			Microsomal signal peptidase 12...		Lus10015793 [exp]	22.7	0.8492

Compare expression of checked genes

Lus10027463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.