Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16860 372 / 4e-130 GCIP-interacting family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039220 [exp] 515 / 0 AT2G16860 421 / 1e-149 GCIP-interacting family protein (.1) Lus10027466 [exp] 52 / 1e-08 AT2G16860 56 / 4e-11 GCIP-interacting family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176200 [exp] 385 / 4e-135 AT2G16860 408 / 2e-144 GCIP-interacting family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08231 [flax] [poplar] SYF2 SYF2 splicing factor
Representative CDS sequence Show only first row Show all	>Lus10027464 pacid=23144457 polypeptide=Lus10027464 locus=Lus10027464.g ID=Lus10027464.BGIv1.0 annot-version=v1.0 ATGTCTGGGGAAAGGCCAGTTCATTCTGACTGCATAAATGCGTCGAATCCTTACCATCAGTGCGTTGAGTATTGCTTCAGGATGATTGCAGAAGCCAAGG CTAGAGCAGATAAAGAAGCAGAATTCAAGCAGGCGGAAGCTGGTAATGCTCAGGCCAGTGCACATTGTTCTCATGGAAAGAAAGATATGCCAGCTGAAAG ACCAGATTCTGATGATGATAGCCACAGTGATAAAAACGATCAAGTTGCAGAAGAAATGCCAGAAGAAGATGATACTAAACTAAGTGGAAGGCAGAAAAAA CTGCTCGAGTTGAAGCGTAAGATGGACGCGGCAAAGAAAGCCAACCAAATGGAAATCAAAGCAGAAATGAAGAGACTGGAACCTCCTCAAGAATCAAGGG GCATCTCCAAACAAAAATGGCTTGAGGAGAGGAAGAAAAAGATCGGTAAACTGCTTGACGCAAATGACTTGGATATGAAGAGGGCATATATGCTAGACAC ACAAGAGGCAGCAGAGGTGAAATACAAGAAATGGGAGAAGGAGCCTGCTCCTGCTGGCTGGGATGTTTTCAACCAGAAGAGTCTGTATAATGCCTACAAA AAGCGGACAAAGAATGTGAATGTTGATCAGGAGGAGTACAACAAAATGAAAGAAGCCGATCCCGAGTTCTACCGCGATGCCTCGAGTCTCCAATATGGGA AGGCTCCAAAGATGTCAGAAGACAAGATTAACAGAATGGTGAAGGAACTCAAGGACAGGGATGAGAAGCGCAAGTCCTTCAGCCGGAGGAGGAAGTTCAA CGAGGAGAAAGACATCGATTCGATCAACGATCGTAACGAGCACTTCAATAAGAAGATTGAACGAGCCTTTGGCAAGTACACGTTGGAGATCAAGAACAAT TTGGAGAGAGGAACTGCACTGCCTGACTAA
AA sequence Show only first row Show all	>Lus10027464 pacid=23144457 polypeptide=Lus10027464 locus=Lus10027464.g ID=Lus10027464.BGIv1.0 annot-version=v1.0 MSGERPVHSDCINASNPYHQCVEYCFRMIAEAKARADKEAEFKQAEAGNAQASAHCSHGKKDMPAERPDSDDDSHSDKNDQVAEEMPEEDDTKLSGRQKK LLELKRKMDAAKKANQMEIKAEMKRLEPPQESRGISKQKWLEERKKKIGKLLDANDLDMKRAYMLDTQEAAEVKYKKWEKEPAPAGWDVFNQKSLYNAYK KRTKNVNVDQEEYNKMKEADPEFYRDASSLQYGKAPKMSEDKINRMVKELKDRDEKRKSFSRRRKFNEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNN LERGTALPD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16860			GCIP-interacting family protei...		Lus10027464 [exp]	0	1
AT1G43860			sequence-specific DNA binding ...		Lus10029749 [exp]	1.0	0.9405
AT1G11780			oxidoreductase, 2OG-Fe(II) oxy...		Lus10015782 [exp]	1.7	0.9236
AT4G17510		UCH3	ubiquitin C-terminal hydrolase...		Lus10026940 [exp]	2.2	0.9188
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10037417 [exp]	2.8	0.9255
AT1G09150			pseudouridine synthase and arc...		Lus10015197 [exp]	4.2	0.9123
AT1G20770			unknown protein		Lus10013217 [exp]	4.6	0.9162
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027954 [exp]	5.5	0.9113
AT3G56210			ARM repeat superfamily protein...		Lus10010218 [exp]	5.8	0.8968
AT5G18540			unknown protein		Lus10002878 [exp]	6.0	0.8956
AT4G22000			unknown protein		Lus10008487 [exp]	6.5	0.9180

Compare expression of checked genes

Lus10027464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.