Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55630 569 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G60050 561 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G01400 166 / 7e-46 unknown protein AT3G60040 170 / 1e-45 F-box family protein (.1) AT3G16010 161 / 4e-43 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G05670 156 / 5e-41 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G64320 154 / 2e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 151 / 3e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G48810 149 / 9e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G79540 149 / 1e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039221 [exp] 783 / 0 AT3G60050 452 / 4e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038863 [exp] 676 / 0 AT3G60050 536 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014983 [exp] 673 / 0 AT3G60050 534 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002675 [exp] 162 / 2e-43 AT4G01400 570 / 0.0 unknown protein Lus10013283 [exp] 159 / 2e-42 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10009201 [exp] 147 / 5e-40 AT1G12700 274 / 3e-86 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10011464 [exp] 151 / 2e-39 AT3G16010 888 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014245 [exp] 147 / 2e-38 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10027914 [exp] 147 / 5e-38 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G144100 [exp] 610 / 0 AT1G55630 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G141400 [exp] 402 / 5e-138 AT1G55630 391 / 7e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G180000 [exp] 178 / 5e-49 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.014G105900 [exp] 159 / 3e-43 AT4G01400 576 / 0.0 unknown protein Potri.006G257300 [exp] 161 / 4e-43 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 160 / 1e-42 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242200 [exp] 159 / 1e-42 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242500 [exp] 158 / 4e-42 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G032100 [exp] 157 / 4e-42 AT1G62930 451 / 2e-152 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G130600 [exp] 156 / 6e-42 AT1G12700 330 / 3e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027465 pacid=23144469 polypeptide=Lus10027465 locus=Lus10027465.g ID=Lus10027465.BGIv1.0 annot-version=v1.0 ATGAACGTTGTAGCCCTGTTCGGTACAAGGTTGGTTCATAGAGTTCCATGTATAGTGGGAGTCACGAGGCGATTGTGTGACTATAGCCCCGATGATAATG CAATGGATAATGGGTTTCAGTTGATTGAAGAACCCATCAAGAGAACTTGGGGAGATTCACGTTCTGATTCAATGGATAGCCATGTTTGGTCCGAGAGGAG GCGCCGAGAATGGGTAGATGCTGAACGTGTCATCGAAATTCTACGGCAAGATGGCCCTGGAATTGACACTAAAGCAGCGTTAACCGAGCTCCATGTAAAG GTCTCTTGGCTACTCGTAAGAGAAGTTCTTGTCGGGATTTTGAGAAGTTTAAATTTCGAGAATAAAGCCAGGTGGGCAAAGTTGGGGTACAAGTTCTTTG TGTGGTCTGGTCAGCAAGAAAACTACAGACACTCGACAAACTCTTATAATCTGATCATAAAGATTTTCGCAGACTGTAACGAGTTCATGGCCATGTGGAG ACTGGTAGAAGAGATGACCGACAACGGTTTCCCAACAACAGCACGAACGTTCAACATATTGATTTCCACCTGTTGCGAGGCAGGTTTGGCTCGGAGGGTT GTAGATAGATTTGTTCAGTCAAAGACTTTTAATTTCAGGCCGTTCAAGCACTCTTACAATGCAATTCTCTACTCTCTTTTGGGAGTTCGTCACTATAGCT TGATCGAGTGGCTCTATAAGAAAATGTTAGCTAAGGGACTTTATCCGGACATCCTAACTTACAACGTTGTCATGTGTGCAAAGTACAGGTTGGGGGAGTT AGGCGACGTTTGGAAGTTAGTTGATGAGATGGTAAGAAACGGGCTTTCCCCCGATTTCCATACCTACAACATCATTCTTCATGCTCTTGGTAAAGCAAAC AAACCACTGGCTGCACATAAACTAATGAATCACATGAGAGAAGAGGGCATTCACCCTTGTGTTCTCCACTACACGACACTGATGGATGGATTAAGTAAGG CCGGGAATTTGGAGGCTTGTGAAGGTTTCTTTGATGAAATGATGAAGAATGGATGTTTTCCGGATGTTGTTTGTTATACTGTAATGATCATGGGATACGT TGTGGTCGGAGAGCTTGAGAAGGCGAGGGCCATGTTTGAGGACATGATCACGAAAGGCCAGCTGCCAAATGTGTTTACCTATAATTCGATGATTTGTGGG TATTGTATGGCGGGGAGGTATAAAGAGGCATGTTGTATGCTTAAGGAGATGGAAGCCAAGGGTTGTAGCCCGAATTTTCTTGTGTATAGGAATTTAGTTG AGAATTTAAGGAATGCTGGGAAGGTTCATGAAGCTAATGATGTAATCAAGCAGATGGCTGAGGATGGGAAGTATGCCCATCTAGCTTCGAAGTTGATGGG ACGACGGCATAGAAGCTGA
AA sequence Show only first row Show all	>Lus10027465 pacid=23144469 polypeptide=Lus10027465 locus=Lus10027465.g ID=Lus10027465.BGIv1.0 annot-version=v1.0 MNVVALFGTRLVHRVPCIVGVTRRLCDYSPDDNAMDNGFQLIEEPIKRTWGDSRSDSMDSHVWSERRRREWVDAERVIEILRQDGPGIDTKAALTELHVK VSWLLVREVLVGILRSLNFENKARWAKLGYKFFVWSGQQENYRHSTNSYNLIIKIFADCNEFMAMWRLVEEMTDNGFPTTARTFNILISTCCEAGLARRV VDRFVQSKTFNFRPFKHSYNAILYSLLGVRHYSLIEWLYKKMLAKGLYPDILTYNVVMCAKYRLGELGDVWKLVDEMVRNGLSPDFHTYNIILHALGKAN KPLAAHKLMNHMREEGIHPCVLHYTTLMDGLSKAGNLEACEGFFDEMMKNGCFPDVVCYTVMIMGYVVVGELEKARAMFEDMITKGQLPNVFTYNSMICG YCMAGRYKEACCMLKEMEAKGCSPNFLVYRNLVENLRNAGKVHEANDVIKQMAEDGKYAHLASKLMGRRHRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55630			Pentatricopeptide repeat (PPR)...		Lus10027465 [exp]	0	1
AT3G60050			Pentatricopeptide repeat (PPR)...		Lus10039221 [exp]	1.0	0.8348
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10026791 [exp]	4.9	0.7182
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10042529 [exp]	8.9	0.7021
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10035553 [exp]	12.0	0.7600
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004615 [exp]	14.5	0.7635
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10009708 [exp]	15.7	0.7516
AT5G46190			RNA-binding KH domain-containi...		Lus10038509 [exp]	18.3	0.7211
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10038994 [exp]	23.7	0.7092
AT5G36930			Disease resistance protein (TI...		Lus10005373 [exp]	27.3	0.6651
AT5G51540			Zincin-like metalloproteases f...		Lus10031715 [exp]	31.6	0.7047

Compare expression of checked genes

Lus10027465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.