Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47900 379 / 4e-129 Protein of unknown function (DUF1624) AT5G27730 312 / 1e-102 Protein of unknown function (DUF1624) (.1) AT5G23760 62 / 4e-12 Copper transport protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039223 [exp] 573 / 0 AT5G47900 349 / 1e-117 Protein of unknown function (DUF1624) Lus10019798 [exp] 457 / 1e-160 AT5G47900 329 / 5e-110 Protein of unknown function (DUF1624) Lus10010030 [exp] 357 / 5e-120 AT5G47900 433 / 2e-149 Protein of unknown function (DUF1624) Lus10014112 [exp] 314 / 7e-104 AT5G47900 237 / 4e-74 Protein of unknown function (DUF1624) Lus10020653 [exp] 305 / 9e-100 AT5G27730 624 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10021514 [exp] 290 / 8e-94 AT5G27730 540 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10022615 [exp] 284 / 2e-91 AT5G27730 532 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10000090 [exp] 236 / 3e-76 AT5G47900 174 / 5e-54 Protein of unknown function (DUF1624) Lus10036333 [exp] 228 / 3e-72 AT5G47900 269 / 6e-89 Protein of unknown function (DUF1624)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176400 [exp] 525 / 0 AT5G47900 400 / 2e-137 Protein of unknown function (DUF1624) Potri.009G136700 [exp] 520 / 0 AT5G47900 395 / 2e-135 Protein of unknown function (DUF1624) Potri.001G071500 [exp] 391 / 9e-134 AT5G47900 519 / 0.0 Protein of unknown function (DUF1624) Potri.003G159200 [exp] 370 / 4e-125 AT5G47900 492 / 1e-172 Protein of unknown function (DUF1624) Potri.014G123800 [exp] 334 / 4e-111 AT5G47900 442 / 1e-152 Protein of unknown function (DUF1624) Potri.006G122500 [exp] 319 / 8e-105 AT5G27730 521 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.013G016900 [exp] 302 / 7e-99 AT5G27730 669 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.005G025200 [exp] 287 / 8e-93 AT5G27730 595 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.015G144200 [exp] 68 / 1e-13 AT5G23760 96 / 2e-26 Copper transport protein family (.1) Potri.012G141500 [exp] 66 / 4e-13 AT5G23760 92 / 1e-25 Copper transport protein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027468 pacid=23144565 polypeptide=Lus10027468 locus=Lus10027468.g ID=Lus10027468.BGIv1.0 annot-version=v1.0 ATGGCTCAGCAAAAATTGGTGCTCAAGGTTTTGACCATGACGGATGAGAAGACGAAGCAGAAGGCGATCGAAGCCGCCGCTGATATCTTCGGGGTGGATT CGATACTAATGATGCTAGTTGATTACGGTGGACACGTGTTCCCAACAATCGCCCACTCTGCATGGGACGGCATTCACTTGGCAGATTCCGTGATGCCGTT TTTCCTCTTCATCGTCGGCGTTTCAATTGCCCTCAAAGTACCAAACAGAGTAGAAGCCACCAGGAAAGCTTTTCTTAAGTCTGTCAAACTGTTTCTGGTC GGCATTCTTCTTCAAGGTGGGTTTTTCCATGGGCTGCATTCCTTGACATATGGTGTTGACATTGAAAGAATACGCCTGCTTGGAATTTTGCAGAGAATAT CAATTGGTTACATTGTTGGGGCCATCTGTGAGATCTGGCTTTCAGTTAGGAGAAAGGGAGATGTTGGCATCATCAAGAGCTATTACTCGCACTGGGTTGC TGCATTAGCGATTGTTGTAGTTTATGCGAGGCTATCGTACGGCCTATACGTTCCAGATTGGCAGTTTGCATTGCCTCAAGATCAACACCATGTTTATACG GTGAAATGTTCAGTGAAGGGTGATGTTGGGCCAGCTTGCAACTCAGCTGGAATGATGGACCGTTATGTCCTTGGCCTCAGTCACCTATACGCAAAGCCTG TTTACAAGAACTTGAAGATATGTAACATGTCTAGCAATAAGCAAGTCCCCGAGGATGCTCCTTCGTGGTGCCATGCTCCTTTCGATCCTGAAGGCCTTCT CAGCTCCTTAACAGCTGCAGTGACTTGCATAATCGGTCTCCAGTTCGGTCACGTTCTTGCTCATGTACAGGATCACAAGGGGCGGTTGGAGAACTGGTCT GGTTTCTCGGTTTTTTTCCTCTTGCTCGGACTGTTCCTCGTCCTTTTAGGGTTCCCAATCAACAAACCGCTGTACTCAATCAGTTACATGTTGATAACCT CTGCTTCAGCAGGCATTACATTCGCTGCACTCTACTTGCTGGTTGATGTATATGGGCAGAGATGGCTGTCACTGCCATTTGAGTGGATGGGGAAGCATTC GTTGACCATTTTCATGGTGGTTTCGTCCAACTTAGCCGTCATTGCTATCCAAGGGTTCTACTGGAAATCTCCTGAGAACAACGTCGTACGTTTGCTTCTT GCGATTACAGCAGTACGATGA
AA sequence Show only first row Show all	>Lus10027468 pacid=23144565 polypeptide=Lus10027468 locus=Lus10027468.g ID=Lus10027468.BGIv1.0 annot-version=v1.0 MAQQKLVLKVLTMTDEKTKQKAIEAAADIFGVDSILMMLVDYGGHVFPTIAHSAWDGIHLADSVMPFFLFIVGVSIALKVPNRVEATRKAFLKSVKLFLV GILLQGGFFHGLHSLTYGVDIERIRLLGILQRISIGYIVGAICEIWLSVRRKGDVGIIKSYYSHWVAALAIVVVYARLSYGLYVPDWQFALPQDQHHVYT VKCSVKGDVGPACNSAGMMDRYVLGLSHLYAKPVYKNLKICNMSSNKQVPEDAPSWCHAPFDPEGLLSSLTAAVTCIIGLQFGHVLAHVQDHKGRLENWS GFSVFFLLLGLFLVLLGFPINKPLYSISYMLITSASAGITFAALYLLVDVYGQRWLSLPFEWMGKHSLTIFMVVSSNLAVIAIQGFYWKSPENNVVRLLL AITAVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47900			Protein of unknown function (D...		Lus10027468 [exp]	0	1
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10019916 [exp]	1.0	0.8401
AT2G46710			Rho GTPase activating protein ...		Lus10030213 [exp]	7.0	0.8036
AT3G61260			Remorin family protein (.1)		Lus10039215 [exp]	7.7	0.7950
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10010999 [exp]	11.3	0.8189
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10017650 [exp]	12.0	0.8046
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10011990 [exp]	12.6	0.8011
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001927 [exp]	14.0	0.7878
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10035934 [exp]	17.4	0.8052
AT3G61260			Remorin family protein (.1)		Lus10027460 [exp]	17.9	0.7791
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	19.5	0.7816

Compare expression of checked genes

Lus10027468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.