Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48970 141 / 6e-44 Heavy metal transport/detoxification superfamily protein (.1) AT3G56891 95 / 2e-25 Heavy metal transport/detoxification superfamily protein (.1) AT1G06330 80 / 9e-20 Heavy metal transport/detoxification superfamily protein (.1) AT2G18196 80 / 2e-19 Heavy metal transport/detoxification superfamily protein (.1) AT4G08570 77 / 1e-18 Heavy metal transport/detoxification superfamily protein (.1) AT1G71050 76 / 5e-18 HIPP20 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) AT4G35060 71 / 4e-16 HIPP25 heavy metal associated isoprenylated plant protein 25, Heavy metal transport/detoxification superfamily protein (.1) AT4G10465 67 / 2e-14 Heavy metal transport/detoxification superfamily protein (.1) AT5G66110 66 / 2e-14 HIPP27 heavy metal associated isoprenylated plant protein 27, Heavy metal transport/detoxification superfamily protein (.1) AT1G22990 63 / 4e-13 HIPP22 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039225 [exp] 191 / 8e-64 AT3G48970 171 / 8e-56 Heavy metal transport/detoxification superfamily protein (.1) Lus10020704 [exp] 80 / 1e-19 AT1G06330 173 / 3e-56 Heavy metal transport/detoxification superfamily protein (.1) Lus10008284 [exp] 77 / 4e-18 AT2G18196 246 / 4e-84 Heavy metal transport/detoxification superfamily protein (.1) Lus10033250 [exp] 77 / 5e-18 AT2G18196 251 / 3e-86 Heavy metal transport/detoxification superfamily protein (.1) Lus10014120 [exp] 75 / 9e-18 AT4G38580 253 / 5e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10019789 [exp] 74 / 1e-17 AT4G38580 254 / 4e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10022508 [exp] 74 / 2e-17 AT4G39700 201 / 2e-67 Heavy metal transport/detoxification superfamily protein (.1) Lus10042946 [exp] 74 / 2e-17 AT1G71050 196 / 3e-65 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) Lus10032446 [exp] 72 / 2e-16 AT1G71050 175 / 2e-56 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G144300 [exp] 174 / 3e-57 AT3G48970 180 / 2e-59 Heavy metal transport/detoxification superfamily protein (.1) Potri.011G065600 [exp] 97 / 1e-26 AT1G06330 159 / 7e-51 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G107500 [exp] 91 / 8e-24 AT1G06330 213 / 5e-72 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G106500 [exp] 89 / 4e-23 AT1G06330 217 / 1e-73 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G024800 [exp] 87 / 2e-22 AT3G56891 167 / 5e-54 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G079800 [exp] 76 / 3e-18 AT4G39700 189 / 2e-62 Heavy metal transport/detoxification superfamily protein (.1) Potri.001G452400 [exp] 75 / 2e-17 AT2G18196 256 / 3e-88 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G056800 [exp] 74 / 2e-17 AT1G06330 147 / 4e-46 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G175400 [exp] 72 / 1e-16 AT4G38580 254 / 2e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Potri.005G167000 [exp] 72 / 1e-16 AT4G08570 229 / 1e-78 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10027470 pacid=23144472 polypeptide=Lus10027470 locus=Lus10027470.g ID=Lus10027470.BGIv1.0 annot-version=v1.0 ATGTCTATGGTGGAGGTTAGAGTTCCAAATCTCGACTGTGAAGGCTGCGCTTCCAAGTTGAGGAAAGCTCTCTTCAAACTCAAAGGAGTGGAAGAAGTTG AAGTGGAAATGGCGATTCAGAAGATAACAGTGAGAGGATATGCACTGGAAGAGAAGAAGATTCTCAAGGCGATTAAGCGCGCCGGCAAATCGGCCGAGCC GTGGCCGTTCCCCGGCTACGCACATTTCTCGTCGTTTTACAAGTACCCGACCTACATTGTCAACCATTACTACGACCCTTACAAGAACCTCGGAGGAGGC GGCAACAACAGCAACAGCGTCCACTCCTTCTTCCAGACGCCGGCAGTTTACTCTGTCGCCGTCGCCTCCGACGAGGCCGTTGCGTCTATCTTTAGCGACG ACAATCCGCATGCTTGTGCCATAATGTGA
AA sequence Show only first row Show all	>Lus10027470 pacid=23144472 polypeptide=Lus10027470 locus=Lus10027470.g ID=Lus10027470.BGIv1.0 annot-version=v1.0 MSMVEVRVPNLDCEGCASKLRKALFKLKGVEEVEVEMAIQKITVRGYALEEKKILKAIKRAGKSAEPWPFPGYAHFSSFYKYPTYIVNHYYDPYKNLGGG GNNSNSVHSFFQTPAVYSVAVASDEAVASIFSDDNPHACAIM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48970			Heavy metal transport/detoxifi...		Lus10027470 [exp]	0	1
AT4G00820		IQD17	IQ-domain 17 (.1)		Lus10023233 [exp]	2.0	0.9288
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10015900 [exp]	4.0	0.9043
AT2G39870			unknown protein		Lus10040247 [exp]	4.5	0.9105
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10007268 [exp]	6.9	0.8879
AT2G38370			Plant protein of unknown funct...		Lus10025249 [exp]	7.5	0.9052
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10006647 [exp]	7.5	0.8896
AT1G11120			unknown protein		Lus10018564 [exp]	8.8	0.8919
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10039386 [exp]	9.0	0.8842
AT3G57070			Glutaredoxin family protein (....		Lus10042021 [exp]	11.5	0.8779
AT1G63650	bHLH	EGL1, ATMYC-2, ...	ENHANCER OF GLABRA 3, basic he...		Lus10024631 [exp]	12.4	0.8690

Compare expression of checked genes

Lus10027470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.