Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03100 53 / 1e-07 F-box/RNI-like superfamily protein (.1) AT5G22730 53 / 2e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02920 52 / 2e-07 F-box/RNI-like superfamily protein (.1) AT3G59150 51 / 8e-07 F-box/RNI-like superfamily protein (.1) AT2G04230 50 / 1e-06 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT5G02910 50 / 1e-06 F-box/RNI-like superfamily protein (.1.2) AT5G53840 49 / 2e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G18150 49 / 3e-06 RNI-like superfamily protein (.1) AT4G26350 49 / 3e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G60710 48 / 4e-06 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035326 [exp] 136 / 2e-38 AT5G27750 66 / 1e-12 F-box/FBD-like domains containing protein (.1) Lus10035308 [exp] 129 / 1e-35 AT5G22730 57 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10035617 [exp] 129 / 2e-35 ND / Lus10035322 [exp] 121 / 8e-31 AT2G26070 176 / 3e-52 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1) Lus10029953 [exp] 110 / 1e-27 AT5G03100 66 / 3e-12 F-box/RNI-like superfamily protein (.1) Lus10037440 [exp] 108 / 1e-25 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10029952 [exp] 105 / 1e-25 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10018543 [exp] 88 / 1e-18 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039271 [exp] 84 / 5e-18 AT5G56820 88 / 5e-19 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104100 [exp] 50 / 2e-06 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 49 / 3e-06 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G337200 [exp] 48 / 7e-06 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024200 [exp] 48 / 8e-06 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G104300 [exp] 47 / 1e-05 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.015G011200 [exp] 45 / 4e-05 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.013G146800 [exp] 44 / 0.0001 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.011G024600 [exp] 44 / 0.0002 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.001G322900 [exp] 43 / 0.0003 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.001G395000 [exp] 42 / 0.0004 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027471 pacid=23144559 polypeptide=Lus10027471 locus=Lus10027471.g ID=Lus10027471.BGIv1.0 annot-version=v1.0 ATGGAGAAGCAGCCAAAGAAATCGGCTGCCGCCGGCGGAGATCTTATTTCAAATTTGCCGGACGAAATCCTCCACTCAATCCTCCGCCGAATACCGTGCG CTAAAGAAGCGGCCCAGACCTCCGCACTATCCAGGCGATGGGGAAACCTCTGGCGCTCGTACCCCAAAGCAGAGTTCGCTTCCCTATACAGGTCAGGCGG GGGGAGCTCTTCGTTCTGGAAATTCAGCGCCGCGACGATCAAAAGGTTTTCTCGTGACAAACAGTTGCGGATGGAAAGTATCAAGATCTCGCTCTACACA AAAAAAGATGAAATCCTTCCCCTAGCTGTTGGTGATGGTTTCCCAGCTTTTGAGCAGCTGCTGGATTTAGCATCGAAGAGGAAAGCTGAACATGTCGATC TCGTAGTAGTTGGCTTCTATGTCGTCTGCCTGCCCTTGGAATTACTCTCGAATTCAAGCGCAAAGACTGTCCACTTTGTAGGAATCAGCATGTCCAATTG GACGGAGGAGAGCGTTTCTAACCTCCTATCTTTGAAATCCTTATCCTTAGCTGGATTCGGCGCAACGGAGAAGAAACTGAAACTGTACGGTCGCAAGCTA GAGAAAATCAAGCTTTCGGCATGGACAGGATTGGAGGAGATCGAGATCAATGTTGTTCCACGTTTAGAGAAATTCCTGCTTAGATATGATGCATTCGAGC CGGATGTCCAGATAAAGAAATGTGAAATAAAAAACTCCGCCGCCAATTGCCAGTGTGACGTTGGTTTCGAGATAAGGCTTGACGGTAGAAGACGACCATG GTTCCTTGAATTCAAGAGTGTCATTGTCAGATTCTCAAAGTTCCATACCGTCAACATCTCTTTGAAGTCCTATTCTTCAGAGCTTGGTCGAGACTGGGAT GGATCATGCTTGGGAGTTAGGTATCAAGAAACTCAGAATTCAGACAGGCTCCCAACTAAGCGTAGCTGTCGAGCTGCTTTGATAGCCACTCAAACTCGAT CATCAATATGCAAGGGCGACATTCGACTTCAGGCGTTTCTCTCAGATTGA
AA sequence Show only first row Show all	>Lus10027471 pacid=23144559 polypeptide=Lus10027471 locus=Lus10027471.g ID=Lus10027471.BGIv1.0 annot-version=v1.0 MEKQPKKSAAAGGDLISNLPDEILHSILRRIPCAKEAAQTSALSRRWGNLWRSYPKAEFASLYRSGGGSSSFWKFSAATIKRFSRDKQLRMESIKISLYT KKDEILPLAVGDGFPAFEQLLDLASKRKAEHVDLVVVGFYVVCLPLELLSNSSAKTVHFVGISMSNWTEESVSNLLSLKSLSLAGFGATEKKLKLYGRKL EKIKLSAWTGLEEIEINVVPRLEKFLLRYDAFEPDVQIKKCEIKNSAANCQCDVGFEIRLDGRRRPWFLEFKSVIVRFSKFHTVNISLKSYSSELGRDWD GSCLGVRYQETQNSDRLPTKRSCRAALIATQTRSSICKGDIRLQAFLSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22730			F-box/RNI-like/FBD-like domain...		Lus10027471 [exp]	0	1
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Lus10041030 [exp]	3.2	0.8900
AT2G27310			F-box family protein (.1)		Lus10003731 [exp]	4.5	0.8520
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	4.6	0.8529
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10025232 [exp]	6.7	0.8436
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	8.7	0.8571
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10026380 [exp]	9.4	0.8300
AT4G20190			unknown protein		Lus10038386 [exp]	13.4	0.7540
AT2G17020			F-box/RNI-like superfamily pro...		Lus10023988 [exp]	15.0	0.8254
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	15.2	0.8340
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	15.6	0.8327

Compare expression of checked genes

Lus10027471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.