Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23850 404 / 2e-133 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G48980 395 / 2e-130 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45830 303 / 6e-97 DTA2 downstream target of AGL15 2 (.1.2) AT1G63420 308 / 4e-96 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61270 294 / 1e-91 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61280 282 / 7e-87 Arabidopsis thaliana protein of unknown function (DUF821) (.1), Arabidopsis thaliana protein of unknown function (DUF821) (.2) AT3G61290 280 / 7e-87 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45840 275 / 3e-84 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G07220 239 / 5e-71 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039226 [exp] 475 / 9e-163 AT5G23850 563 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10039228 [exp] 384 / 5e-126 AT5G23850 657 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027473 [exp] 330 / 3e-106 AT1G63420 531 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10024519 [exp] 315 / 2e-99 AT1G63420 561 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10037864 [exp] 262 / 1e-79 AT2G45830 520 / 0.0 downstream target of AGL15 2 (.1.2) Lus10037863 [exp] 246 / 2e-73 AT5G23850 446 / 3e-152 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10018239 [exp] 240 / 3e-71 AT1G07220 686 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10040665 [exp] 239 / 5e-71 AT1G07220 688 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10008017 [exp] 229 / 9e-69 AT5G23850 330 / 1e-109 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G144400 [exp] 405 / 2e-134 AT5G23850 659 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.003G125000 [exp] 404 / 3e-134 AT5G23850 603 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.014G081600 [exp] 337 / 6e-108 AT2G45830 613 / 0.0 downstream target of AGL15 2 (.1.2) Potri.002G157900 [exp] 325 / 7e-104 AT5G23850 537 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.002G157800 [exp] 316 / 2e-100 AT5G23850 513 / 5e-179 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G252000 [exp] 234 / 4e-69 AT1G07220 655 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G106500 [exp] 85 / 1e-19 AT3G48980 85 / 1e-20 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF05686 [flax] [poplar] Glyco_transf_90 Glycosyl transferase family 90
Representative CDS sequence Show only first row Show all	>Lus10027472 pacid=23144497 polypeptide=Lus10027472 locus=Lus10027472.g ID=Lus10027472.BGIv1.0 annot-version=v1.0 ATGCAGCTCGCTCTTCAGAGGTGGTGGCACGGATCTAGTGCTCACCGCCACTTGCTAATCGACACCATCCGCCGCCCGTTGATGAAGCTTCCTCCTAGAT CCTCAGCTGTCCTCTTCTCCCTCCTCTTCCTCATCGGCGGCGCGTTCATCTCCACTCGCCTCCTCGACTCCAATGCATTTACAGTTTCCGGAGGAAACAA TATCTCCAAGTCTTCGCCGGCGACTTCATTAACGGCCAACGCGGTTCCTACCGAATTACCGGAAAAGCCCCGGAGGAGAAGAATCGAGGTTCCACTCAAC TGCACTGCACTCAACCAAACCGGAACCTGCCCCACCAACTACTTGACACTCCAGGGTGGTGACGACGACGGCTATAGCGGCATTGAATCGCCGCCGTCCA CGTGTCCAGAGTACTTCCGCTGGATCCACGAGGACCTCCGTCCATGGGGGAGGACGGGGATCACTAGGGAGACGCTGGAATCGGCGAAGCGGACGGCGAA TTTCAAGCTGGTGATCGTGAACGGTAAGGCATACGTGGAGAAGTATCAGAAGGCGTTTCAGACGAGGGATGTTTTCACCATTTGGGGGATTGTTCAGTTG CTCCGTAAGTACCCTGGTAAGGTGCCGGATTTGGAGCTGATGTTTGATTGTGTTGACTGGCCGGTCGTTAAATCGGACGTCTACGATAAGCCCAATGCCA CCGCGCCGCCGCCGCTGTTTCGGTACTGTGGGGATGATCAGACGCGCGACATCGTTTTCCCTGATTGTTCCTCCCCACCGTCCCACATGCAGCTCGCTCT TCAGAGATGGTGGCACGGATCTAGTCCTCACCGCCACTTGCTAATCGACACCATCCGCCGCCCGTTGTTGATACTTCCTCCTAGACCCTCAGCTGTCCTC TTCTCCCTCCTCTTCCTCATCGGCGGCGCGTTCATCTCCACTCGCCTCCTCGACTCCAATGCATTTACAGTTTCCGGAGGAAACAATATCTCCAAGTCTT CGCCGGCGACTTCATTAACGGCCAACGCGGTTCCTACCGAATTACCGGAAAAGCCCCGGAGGAGAAGAATCGAGGTTCCACTCAACTGCACTGCACTCAA CCAAACCGGAACCTGCCCCACCAACTACTTGACACTCCAGGGTGGTGACGACGACGGCTCTAGACGCTCGACATCGTTTTCCCTGATTGGTCATTCTGGG GGTGGGTTTTGGATTAGGCCGGAGGTGAACATTAAGCCATGGGAAGAGCTGCAGAGTGAGTTAGGAGAAGGAAATGGACGAACGAGATGGATGGATAGAG AGCCGTATGCTTACTGGAAAGGGAATCCAACGGTTGCAGAGACAAGAATGGACCTTATGAAGTGTAATGTATCTGATGAACACGACTGGAATGCTCGGGT CTTTGCTCAGGATTGGATTAAGGAATCACAGCAAGGGTACAAGCAATCAGATTTGGCCAGCCAATGTGTTCATAGGTACAAGATCTACATCGAAGGGTCA GCATGGTCAGTGAGCCAGAAATACATTATGGCCTGCGATTCTGTTACCCTGCTAGTAAAGCCTCATTACTATGACTTCTTCACCAGAAGCTTGGTTCCGG TTCATCACTACTGGCCTATACAAGAACACGACAAGTGCAAGTCGATCAAGTTCGCTGTCGATTGGGGCAACAGCCATAAGCACAAGGCGCAAGAGATCGG GAAGGCAGCGAGTTCGTTCATTCAGCCGGAATTAAGGATGGATTACGTGTACGATTACATGCTCCATCTTTTGACTGAGTACTCGAAGCTGCTGACTTTC AAGCCGGTTGTTCCGAGGGGAGGTGTAGAGCTTTGTGCAGAAGAAATGGCTTGCAAAGCGGACGGGATAGAGAAGAAATTCATGATGGAGTCGTTGGTTA AGGGTCCTTCGGAGACGAGTCCATGCTCGATTCCTCCTCCTTACGACCCTCCATCGCTGAGCAGTATGTTGAGAAGAAACTTGAACTCGGTTAAGCAGGT TGAGTTATGGGAGAAGGGGTACTGGGACAGTCGGAATATGCAGCAGGCTTAG
AA sequence Show only first row Show all	>Lus10027472 pacid=23144497 polypeptide=Lus10027472 locus=Lus10027472.g ID=Lus10027472.BGIv1.0 annot-version=v1.0 MQLALQRWWHGSSAHRHLLIDTIRRPLMKLPPRSSAVLFSLLFLIGGAFISTRLLDSNAFTVSGGNNISKSSPATSLTANAVPTELPEKPRRRRIEVPLN CTALNQTGTCPTNYLTLQGGDDDGYSGIESPPSTCPEYFRWIHEDLRPWGRTGITRETLESAKRTANFKLVIVNGKAYVEKYQKAFQTRDVFTIWGIVQL LRKYPGKVPDLELMFDCVDWPVVKSDVYDKPNATAPPPLFRYCGDDQTRDIVFPDCSSPPSHMQLALQRWWHGSSPHRHLLIDTIRRPLLILPPRPSAVL FSLLFLIGGAFISTRLLDSNAFTVSGGNNISKSSPATSLTANAVPTELPEKPRRRRIEVPLNCTALNQTGTCPTNYLTLQGGDDDGSRRSTSFSLIGHSG GGFWIRPEVNIKPWEELQSELGEGNGRTRWMDREPYAYWKGNPTVAETRMDLMKCNVSDEHDWNARVFAQDWIKESQQGYKQSDLASQCVHRYKIYIEGS AWSVSQKYIMACDSVTLLVKPHYYDFFTRSLVPVHHYWPIQEHDKCKSIKFAVDWGNSHKHKAQEIGKAASSFIQPELRMDYVYDYMLHLLTEYSKLLTF KPVVPRGGVELCAEEMACKADGIEKKFMMESLVKGPSETSPCSIPPPYDPPSLSSMLRRNLNSVKQVELWEKGYWDSRNMQQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23850			Arabidopsis thaliana protein o...		Lus10027472 [exp]	0	1
AT5G23850			Arabidopsis thaliana protein o...		Lus10039226 [exp]	2.4	0.8607
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10027484 [exp]	2.8	0.8828
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10040519 [exp]	7.7	0.8707
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10031011 [exp]	12.2	0.8713
AT4G40042			Microsomal signal peptidase 12...		Lus10015793 [exp]	14.0	0.8688
					Lus10032951 [exp]	19.1	0.8320
AT3G43520			Transmembrane proteins 14C (.1...		Lus10027640 [exp]	19.1	0.8643
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10004712 [exp]	19.4	0.8393
AT4G02040			unknown protein		Lus10019069 [exp]	19.6	0.8438
AT2G42910			Phosphoribosyltransferase fami...		Lus10010935 [exp]	20.4	0.8428

Compare expression of checked genes

Lus10027472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.