Lus10027473 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G48980 491 / 6e-171 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
AT5G23850 484 / 6e-168 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
AT2G45830 382 / 1e-128 DTA2 downstream target of AGL15 2 (.1.2)
AT3G61270 377 / 9e-127 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
AT2G45840 335 / 4e-110 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
AT3G61280 335 / 9e-110 Arabidopsis thaliana protein of unknown function (DUF821) (.1), Arabidopsis thaliana protein of unknown function (DUF821) (.2)
AT3G61290 332 / 1e-109 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
AT1G63420 300 / 6e-96 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
AT1G07220 219 / 2e-65 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039228 752 / 0 AT5G23850 657 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Lus10024519 402 / 3e-136 AT1G63420 561 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Lus10039226 389 / 5e-132 AT5G23850 563 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Lus10027472 364 / 2e-119 AT5G23850 439 / 4e-147 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Lus10037863 331 / 1e-108 AT5G23850 446 / 3e-152 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Lus10037864 288 / 3e-92 AT2G45830 520 / 0.0 downstream target of AGL15 2 (.1.2)
Lus10018239 217 / 1e-64 AT1G07220 686 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Lus10040665 213 / 2e-63 AT1G07220 688 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Lus10008017 181 / 1e-52 AT5G23850 330 / 1e-109 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G144400 509 / 1e-178 AT5G23850 659 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Potri.003G125000 452 / 7e-156 AT5G23850 603 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Potri.014G081600 399 / 5e-135 AT2G45830 613 / 0.0 downstream target of AGL15 2 (.1.2)
Potri.002G157900 384 / 1e-129 AT5G23850 537 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Potri.002G157800 373 / 2e-125 AT5G23850 513 / 5e-179 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Potri.001G252000 284 / 1e-90 AT1G07220 655 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Potri.001G106500 94 / 2e-23 AT3G48980 85 / 1e-20 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0113 GT-B PF05686 Glyco_transf_90 Glycosyl transferase family 90
Representative CDS sequence
>Lus10027473 pacid=23144544 polypeptide=Lus10027473 locus=Lus10027473.g ID=Lus10027473.BGIv1.0 annot-version=v1.0
ATGAGGGATAGCAATGCACAACCGCAGATGGTGCATCTCCCGATGCCGATTGCGAAAAACTCCACCTTAATTTTCCTCGCCATTTTTCTCCTCGTCGGCG
CGTACGTGTCCACGCGCCTCTTCTCCGACGAAATTCCGATTCAAACGGAAGAGAGAGAAATTAAAAAGGACACGCCAACCACCACGTGGCAGGAATATAG
AATCGAGGTTCCACTGGACTGCCCTGGGTACACAACCACCGGAGTATGCCCTACTAACTACCCGCCGACTTCTCCTTCTCCTCCTACCGACAACCATCCT
CCGCCGTCCACCTGTCCAGAGTACTTCCGTTTGATCCACGAGGACCTGCGGCCATGGGCCCACACGGGGATCACGAGGGAGACGCTGGAGAGAGCAAAAA
CGACGGCGAATTTCAGGCTGGTGATAGTGAATAGACGAGCCTACGTGGAGACTTTCGAGAAAGGGTTCCAGACGAGGGACACTTTTACGCTGTGGGGGTT
CCTACAGTTGCTCCGTAGGTACCCAGGTCAGCTCCCCGATTTGGAGCTGATGTTTGACTGCGTCGATTGGCCGGTCGTCAGAACGGAGAACTACACGGCG
GCGGATGCTCCTCCGCCGCCGCCGCCGTTTCTCTACCTCGTCGGTAACCCTGACGTTGCTGAGACGAGGCTGGACCTTCTGAAATGCAACGTCTCCGAAA
CCGGTCAGGATTGGAATGCTCGAGTCTATAGACAGGATTGGTTCAAAGAATCCCAACAGGGTTACAAGCAATCTGATCTAGCAAGCCAATGCATTCACAG
GTACAAGATTTACATAGAAGGGTCAGCGTGGTCGGTGAGCCAGAAGTACATTCTGGCTTGTGACTCTGTTACGCTGATCGTGACTCCGCATTACTACGAC
TTCTTCACCAGAGGGTTGATGCCGGTGAGGCATTTTTGGCCCGTTAAGGAGGATGATAAGTGCAAGTCTATTAAGTTTGCTGTTGATTGGGGGAATAGCC
ACAAGAGAAAGGCGCAAAACATAGGAAGAGCGGCGAGCAACTTCATCCAGAACGACATGAAGATGGAGAACGTGTACGACTACATGTTCCACTTACTAAA
CGAGTACGCGAAGCTGCTCAGGTTCAAGCCGGAGGTGCCCAAGAAAGCCACCGAGCTATGTTCGGAGAGCATGGCGTGTAACGCTCCGGCCGAAGGGTTT
CAGAAGCAGTTCATGATGGATTCACTAGTGAAGTATCCTTCCGAGAAGCCTCCGTGCGGAATGCCTCCTCCTCACGACCCAGCCACAATGTACGGCATTC
TGAAGAAGAGGGACACTGCTATGAAGATTGTTGATCTCTTGGAGAGGACATACTGGGGGAAGCAGAAACAGAATCAAACTCAGCCTTGA
AA sequence
>Lus10027473 pacid=23144544 polypeptide=Lus10027473 locus=Lus10027473.g ID=Lus10027473.BGIv1.0 annot-version=v1.0
MRDSNAQPQMVHLPMPIAKNSTLIFLAIFLLVGAYVSTRLFSDEIPIQTEEREIKKDTPTTTWQEYRIEVPLDCPGYTTTGVCPTNYPPTSPSPPTDNHP
PPSTCPEYFRLIHEDLRPWAHTGITRETLERAKTTANFRLVIVNRRAYVETFEKGFQTRDTFTLWGFLQLLRRYPGQLPDLELMFDCVDWPVVRTENYTA
ADAPPPPPPFLYLVGNPDVAETRLDLLKCNVSETGQDWNARVYRQDWFKESQQGYKQSDLASQCIHRYKIYIEGSAWSVSQKYILACDSVTLIVTPHYYD
FFTRGLMPVRHFWPVKEDDKCKSIKFAVDWGNSHKRKAQNIGRAASNFIQNDMKMENVYDYMFHLLNEYAKLLRFKPEVPKKATELCSESMACNAPAEGF
QKQFMMDSLVKYPSEKPPCGMPPPHDPATMYGILKKRDTAMKIVDLLERTYWGKQKQNQTQP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G63420 Arabidopsis thaliana protein o... Lus10027473 0 1
AT2G14260 PIP proline iminopeptidase (.1.2) Lus10010743 10.1 0.6961
AT2G14750 APK1, ATAKN1, A... ADENOSINE-5'-PHOSPHOSULFATE \(... Lus10014641 14.2 0.7691
AT5G06570 alpha/beta-Hydrolases superfam... Lus10008439 15.5 0.7360
AT1G55190 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, ... Lus10005088 33.6 0.7393
AT1G13740 AFP2 ABI five binding protein 2 (.1... Lus10004645 129.2 0.6882
Lus10029181 131.9 0.6849
AT4G25570 ACYB-2 Cytochrome b561/ferric reducta... Lus10014986 238.2 0.6438

Lus10027473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.