Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52360 244 / 6e-85 ADF10 actin depolymerizing factor 10 (.1) AT4G25590 244 / 8e-85 ADF7 actin depolymerizing factor 7 (.1) AT1G01750 238 / 3e-82 ADF11 actin depolymerizing factor 11 (.1) AT4G00680 236 / 1e-81 ADF8 actin depolymerizing factor 8 (.1) AT3G46000 226 / 1e-77 ADF2 actin depolymerizing factor 2 (.1) AT5G59890 225 / 2e-77 ADF4, ATADF4 actin depolymerizing factor 4 (.1.2) AT3G46010 224 / 5e-77 ATADF1, ADF1 actin depolymerizing factor 1 (.1.2) AT5G59880 211 / 1e-71 ADF3 actin depolymerizing factor 3 (.1.2) AT2G31200 171 / 1e-55 ADF6, ATADF6 actin depolymerizing factor 6 (.1) AT2G16700 160 / 1e-51 ADF5, ATADF5 actin depolymerizing factor 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039229 [exp] 270 / 4e-95 AT5G52360 231 / 6e-80 actin depolymerizing factor 10 (.1) Lus10038859 [exp] 247 / 4e-86 AT4G25590 232 / 2e-80 actin depolymerizing factor 7 (.1) Lus10014977 [exp] 246 / 2e-85 AT4G25590 233 / 1e-80 actin depolymerizing factor 7 (.1) Lus10024418 [exp] 223 / 2e-76 AT5G59890 249 / 6e-87 actin depolymerizing factor 4 (.1.2) Lus10024417 [exp] 219 / 1e-74 AT3G46010 250 / 3e-87 actin depolymerizing factor 1 (.1.2) Lus10025319 [exp] 219 / 1e-74 AT3G46010 250 / 3e-87 actin depolymerizing factor 1 (.1.2) Lus10023428 [exp] 216 / 8e-71 AT5G59890 244 / 4e-81 actin depolymerizing factor 4 (.1.2) Lus10040307 [exp] 214 / 2e-70 AT5G59890 243 / 2e-81 actin depolymerizing factor 4 (.1.2) Lus10008489 [exp] 182 / 5e-60 AT1G01750 192 / 2e-64 actin depolymerizing factor 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G141600 [exp] 245 / 3e-85 AT4G25590 254 / 5e-89 actin depolymerizing factor 7 (.1) Potri.015G144500 [exp] 243 / 2e-84 AT4G25590 257 / 6e-90 actin depolymerizing factor 7 (.1) Potri.001G236700 [exp] 232 / 4e-80 AT5G59890 256 / 2e-89 actin depolymerizing factor 4 (.1.2) Potri.008G052100 [exp] 231 / 9e-80 AT5G59890 249 / 1e-86 actin depolymerizing factor 4 (.1.2) Potri.001G106200 [exp] 231 / 1e-79 AT4G00680 234 / 6e-81 actin depolymerizing factor 8 (.1) Potri.009G028100 [exp] 231 / 1e-79 AT5G59890 256 / 1e-89 actin depolymerizing factor 4 (.1.2) Potri.003G125500 [exp] 228 / 2e-78 AT4G00680 234 / 1e-80 actin depolymerizing factor 8 (.1) Potri.009G028200 [exp] 227 / 4e-78 AT5G59890 258 / 4e-90 actin depolymerizing factor 4 (.1.2) Potri.001G236400 [exp] 226 / 1e-77 AT5G59890 246 / 1e-85 actin depolymerizing factor 4 (.1.2) Potri.010G208500 [exp] 222 / 4e-76 AT5G59890 255 / 4e-89 actin depolymerizing factor 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00241 [flax] [poplar] Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Representative CDS sequence Show only first row Show all	>Lus10027474 pacid=23144514 polypeptide=Lus10027474 locus=Lus10027474.g ID=Lus10027474.BGIv1.0 annot-version=v1.0 ATGGCAAACTCGGCATCAGGAATGGCAGTCCACGACGACTGCAAGCTCAAGTTTTTGGAACTGAAAGCAAAGAGGAACTACAGGTTCATAGTTTTCAAGA TCTTGAACCAGCAGGTTTCTGTAGAGAAACTCGGGAGCCCCGAGGAGACGTACGAGGATTTCACCTCATCCTTGCCCCCGAACGAGTGTCGATATGCTGT CTACGACTTTGATTTCACCACCGATGAGAACTGCCAGAAGAGCAAGATCTTCTTCATTGCATGGGCACCTGATATATCCAAGGTGAGGGAAAAGATGGTG TACGCTAGCTCGAAAGATCGATTCAAGAGGGAACTGGATGGGATTCAAGTAGAGCTACAAGCCACTGATCCCAGCGAAATGAGCCTCGACATTGTCAAAG GCCGAGCTCTTTAG
AA sequence Show only first row Show all	>Lus10027474 pacid=23144514 polypeptide=Lus10027474 locus=Lus10027474.g ID=Lus10027474.BGIv1.0 annot-version=v1.0 MANSASGMAVHDDCKLKFLELKAKRNYRFIVFKILNQQVSVEKLGSPEETYEDFTSSLPPNECRYAVYDFDFTTDENCQKSKIFFIAWAPDISKVREKMV YASSKDRFKRELDGIQVELQATDPSEMSLDIVKGRAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52360		ADF10	actin depolymerizing factor 10...		Lus10027474 [exp]	0	1
AT3G52500			Eukaryotic aspartyl protease f...		Lus10013324 [exp]	5.3	0.8011
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10011713 [exp]	8.0	0.8467
AT1G68670	GARP		myb-like transcription factor ...		Lus10035043 [exp]	12.5	0.7999
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10009564 [exp]	20.0	0.8000
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10023471 [exp]	26.5	0.7553
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031153 [exp]	28.4	0.7630
AT3G16180			Major facilitator superfamily ...		Lus10014537 [exp]	29.7	0.7559
AT5G53750			CBS domain-containing protein ...		Lus10029665 [exp]	32.4	0.7754
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10025511 [exp]	38.3	0.7799
AT1G64450			Glycine-rich protein family (....		Lus10003189 [exp]	39.2	0.7687

Compare expression of checked genes

Lus10027474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.