Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48990 353 / 1e-121 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 141 / 1e-39 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 126 / 5e-34 AMP-dependent synthetase and ligase family protein (.1) AT3G21230 124 / 4e-33 4CL5 4-coumarate:CoA ligase 5 (.1) AT3G21240 122 / 1e-32 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G20480 122 / 2e-32 AMP-dependent synthetase and ligase family protein (.1) AT1G20560 121 / 2e-32 AAE1 acyl activating enzyme 1 (.1.2) AT1G20510 121 / 3e-32 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20500 120 / 9e-32 AMP-dependent synthetase and ligase family protein (.1) AT3G16910 113 / 3e-29 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039232 [exp] 398 / 5e-139 AT3G48990 840 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 137 / 8e-38 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 135 / 4e-37 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 134 / 1e-36 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 130 / 2e-35 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026143 [exp] 120 / 7e-32 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10016630 [exp] 119 / 1e-31 AT4G19010 532 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10002791 [exp] 120 / 2e-31 AT5G63380 688 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10012266 [exp] 119 / 2e-31 AT5G16370 733 / 0.0 acyl activating enzyme 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G144700 [exp] 340 / 3e-116 AT3G48990 776 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G105900 [exp] 337 / 3e-115 AT3G48990 750 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 134 / 6e-37 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G112800 [exp] 134 / 8e-37 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138350 [exp] 127 / 2e-34 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.006G169700 [exp] 127 / 4e-34 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.004G082000 [exp] 126 / 6e-34 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.010G230200 [exp] 126 / 7e-34 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.012G095000 [exp] 124 / 2e-33 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138451 [exp] 124 / 4e-33 AT1G65880 730 / 0.0 benzoyloxyglucosinolate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10027477 pacid=23144595 polypeptide=Lus10027477 locus=Lus10027477.g ID=Lus10027477.BGIv1.0 annot-version=v1.0 ATGTCGTCGAACCCATTGCCCGAAGACGGTCCACATAAACCCGGGTCGGTCGGGAAACCAGTTGGTCAAGAGATGGCGATCCTGGATGAAAGTGGCGCGA TTCAGGGCCCCGATTCCAAAGGTGAAGTCTGCATTAGAGGTCCAAATGTGACCAAGGGATACAAGAACAACCCTGATGCTAACAAGGCAGGATTCCTATT CGGGTGGTTTCATACCGGAGATATCGGTTATTTCGACTCGGATGGTTATTTGAATCTTGTGGGCAGGATTAAGGAGCTTATCAACCGTGGAGGGGAGAAG ATATCACCAATCGAAGTGGACGCTGTTCTTCTATCTCATCCAGACATTGCTCAAGCTGTATGTTTCGGAGTCCCCGATGAGAAATACGGCGAAGAGATAA ACTGTGCAATCATACCAAGAGAAGGATCGAAGATCGACGAGGCAGAGGTGCAGAGCTTCTGCAAGAAGAACCTGGCCGCCTTCAAGGTCCCGAAGAAGGT GTTCATCACGGACGATGTTCCGAAGACGGCCAGTGGTAAGATCCAGAGAAGAATTGTGGCTCAGCACTTCATCTCTTGA
AA sequence Show only first row Show all	>Lus10027477 pacid=23144595 polypeptide=Lus10027477 locus=Lus10027477.g ID=Lus10027477.BGIv1.0 annot-version=v1.0 MSSNPLPEDGPHKPGSVGKPVGQEMAILDESGAIQGPDSKGEVCIRGPNVTKGYKNNPDANKAGFLFGWFHTGDIGYFDSDGYLNLVGRIKELINRGGEK ISPIEVDAVLLSHPDIAQAVCFGVPDEKYGEEINCAIIPREGSKIDEAEVQSFCKKNLAAFKVPKKVFITDDVPKTASGKIQRRIVAQHFIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48990			AMP-dependent synthetase and l...		Lus10027477 [exp]	0	1
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10009717 [exp]	2.2	0.9228
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10008633 [exp]	3.3	0.9116
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10029949 [exp]	4.0	0.9332
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	5.3	0.9447
AT3G25160			ER lumen protein retaining rec...		Lus10003146 [exp]	8.4	0.9123
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034260 [exp]	8.8	0.8903
AT2G02870			Galactose oxidase/kelch repeat...		Lus10012841 [exp]	9.5	0.8931
					Lus10018014 [exp]	10.6	0.9185
AT5G20900	ZIM	TIFY3B, JAZ12	jasmonate-zim-domain protein 1...		Lus10027639 [exp]	10.7	0.8967
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10026666 [exp]	11.8	0.9060

Compare expression of checked genes

Lus10027477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.