Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48990 405 / 1e-139 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 71 / 2e-13 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT4G19010 65 / 1e-11 AMP-dependent synthetase and ligase family protein (.1) AT1G65060 64 / 3e-11 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT5G38120 64 / 4e-11 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT1G20490 63 / 6e-11 AMP-dependent synthetase and ligase family protein (.1) AT3G16170 63 / 7e-11 AAE13 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) AT4G05160 62 / 1e-10 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 62 / 2e-10 AMP-dependent synthetase and ligase family protein (.1) AT3G21230 59 / 1e-09 4CL5 4-coumarate:CoA ligase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039232 [exp] 514 / 0 AT3G48990 840 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10024123 [exp] 67 / 4e-12 AT3G21240 835 / 0.0 4-coumarate:CoA ligase 2 (.1) Lus10008677 [exp] 66 / 1e-11 AT1G51680 834 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10026143 [exp] 65 / 3e-11 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10012280 [exp] 64 / 3e-11 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10005390 [exp] 62 / 1e-10 AT1G51680 827 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10027377 [exp] 62 / 2e-10 AT4G05160 95 / 2e-19 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 61 / 4e-10 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10016135 [exp] 60 / 7e-10 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G144700 [exp] 426 / 9e-148 AT3G48990 776 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G105900 [exp] 355 / 5e-120 AT3G48990 750 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G036900 [exp] 74 / 1e-14 AT3G21240 768 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.005G248500 [exp] 74 / 2e-14 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.003G188500 [exp] 74 / 2e-14 AT3G21240 741 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.006G169700 [exp] 71 / 3e-13 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.018G094200 [exp] 70 / 5e-13 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.019G049500 [exp] 70 / 6e-13 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2) Potri.003G099700 [exp] 69 / 8e-13 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G230200 [exp] 69 / 1e-12 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10027478 pacid=23144504 polypeptide=Lus10027478 locus=Lus10027478.g ID=Lus10027478.BGIv1.0 annot-version=v1.0 ATGGAGACGACTCAAACTCTCACTGGATTGCTCAAACGCGTCGCCGGCGACTTCCCCGACCGCCGAGCGCTCTCTGTCTCCGGCAAGTTCGATCTTACTC ACGCTCGTCTCGATGAACTCGTCGAACGCGCCGCCTCTCGCCTCGTCTCCGCCGGAATCAAGCCCGGGGACGTCGTCGCCCTCACGTTCCCCAACACCGT CGAGTTCGTGGTGATGTTTTTGGCTGTGATTCGAGCCAGAGCCACCGCAGCTCCGCTCAACGCCGCCTACACGGCGGAGGAATTCGAGTTCTACCTATCT GACTCAGAATCGAAGCTACTGCTTACTTCGCGAGACGGAAACGCGGCAGCGGAAGCCGCCGCTTCCAAGCTACAAGTTACTCACGTCACCGCCGGTCTTA CCAGCGAAGACTTAGAACTCATCCTCTCTCTTCCTCCGTCCGAGACGGGAGATAACTCGATAACTCAGCTGGTGAATGATCCGTCCGATGTGGCACTCTT CCTTCATACCTCCGGAACCACCAGCAGGCCCAAGGGAGTTCCATTGACTCAGCTCAATTTGGCCTCATCCGTACAGAACATTAAGTCAGTGTACAAGCTC ACAGAGTCAGACTCGACCGTGATTGTCCTGCCATTGTTTCATGTGCATGGATTGTTAGCAGGGCTATTGAGTTCATTTGTGGCTGGAGCTGCTGTGACAC TGCCAGCTTCTGGTCGATTCTCTGCTTCAACATTTTGGCAGGACATGTTGAAGTACAATGCTACTTGGTACACAGCAGTTCCCACCATTCACCAGATCAT ACTGGACCGCCATGCAAGTAGCCCAGAGCCTGTTTACCCGAAGCTTCGATTCATTCGTAGCTGCAGCGCTTCACTTGCGCTTCACTTTCCCCGTCGATAT TGGCTAGGCTCGAGGAGGCATTTGGAGCACCGGTTCTGGAGGCCTATGCAATGA
AA sequence Show only first row Show all	>Lus10027478 pacid=23144504 polypeptide=Lus10027478 locus=Lus10027478.g ID=Lus10027478.BGIv1.0 annot-version=v1.0 METTQTLTGLLKRVAGDFPDRRALSVSGKFDLTHARLDELVERAASRLVSAGIKPGDVVALTFPNTVEFVVMFLAVIRARATAAPLNAAYTAEEFEFYLS DSESKLLLTSRDGNAAAEAAASKLQVTHVTAGLTSEDLELILSLPPSETGDNSITQLVNDPSDVALFLHTSGTTSRPKGVPLTQLNLASSVQNIKSVYKL TESDSTVIVLPLFHVHGLLAGLLSSFVAGAAVTLPASGRFSASTFWQDMLKYNATWYTAVPTIHQIILDRHASSPEPVYPKLRFIRSCSASLALHFPRRY WLGSRRHLEHRFWRPMQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48990			AMP-dependent synthetase and l...		Lus10027478 [exp]	0	1
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10035247 [exp]	3.9	0.9109
AT1G63830			PLAC8 family protein (.1.2.3)		Lus10017509 [exp]	6.0	0.9156
AT1G07940			GTP binding Elongation factor ...		Lus10040378 [exp]	6.8	0.8909
AT1G11050			Protein kinase superfamily pro...		Lus10028549 [exp]	21.2	0.9067
AT1G15530			Concanavalin A-like lectin pro...		Lus10019879 [exp]	29.1	0.9105
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10034619 [exp]	35.9	0.9040
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10033937 [exp]	48.0	0.8486
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10031079 [exp]	48.6	0.9039
AT1G21380			Target of Myb protein 1 (.1)		Lus10029739 [exp]	54.0	0.8891
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10039587 [exp]	59.7	0.8675

Compare expression of checked genes

Lus10027478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.