Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16260 199 / 5e-62 Glycosyl hydrolase superfamily protein (.1) AT5G20390 197 / 1e-61 Glycosyl hydrolase superfamily protein (.1) AT5G20340 190 / 1e-58 BG5 beta-1,3-glucanase 5 (.1) AT5G20330 190 / 2e-58 BETAG4 "beta-1,3-glucanase 4", beta-1,3-glucanase 4 (.1) AT3G57260 181 / 2e-55 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT1G77790 181 / 3e-55 Glycosyl hydrolase superfamily protein (.1) AT3G57270 181 / 4e-55 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT1G33220 176 / 2e-53 Glycosyl hydrolase superfamily protein (.1) AT3G57240 176 / 2e-53 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT5G56590 179 / 8e-53 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039233 [exp] 474 / 5e-170 AT4G16260 258 / 5e-84 Glycosyl hydrolase superfamily protein (.1) Lus10014110 [exp] 196 / 3e-61 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10010091 [exp] 201 / 1e-59 AT1G02305 520 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10016883 [exp] 184 / 1e-56 AT4G16260 391 / 1e-136 Glycosyl hydrolase superfamily protein (.1) Lus10012937 [exp] 186 / 3e-56 AT5G56590 617 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031037 [exp] 182 / 2e-55 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10028122 [exp] 177 / 3e-53 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10019801 [exp] 176 / 4e-53 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10011482 [exp] 174 / 1e-51 AT3G15800 540 / 0.0 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G255100 [exp] 218 / 1e-69 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.002G089200 [exp] 208 / 9e-66 AT1G77780 309 / 6e-104 Glycosyl hydrolase superfamily protein (.1) Potri.005G172000 [exp] 206 / 8e-65 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1) Potri.009G050300 [exp] 191 / 1e-59 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.016G057600 [exp] 184 / 2e-56 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.010G143166 [exp] 183 / 4e-56 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.010G142800 [exp] 184 / 5e-56 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.006G048100 [exp] 181 / 2e-55 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057400 [exp] 180 / 6e-55 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.004G132700 [exp] 177 / 5e-53 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10027479 pacid=23144541 polypeptide=Lus10027479 locus=Lus10027479.g ID=Lus10027479.BGIv1.0 annot-version=v1.0 ATGGAAGTGGTCCTAGGCACGGTGAACTCCAATCTTGAACAGCTGGCGACCAACCCGTCTTTCGCGGCACAATGGGTCTCAGCCAACGTGGTCCCTTACC ACCCAGCTCTAAAACTCCGCTACGTGTCAGCCGGTAACGAGGTCATCCCGGGCCCACTGGCGCAGCACGTGCTCGGAGCGACTGAAAATCTCGATAACGC CCTCAAATCCTCCGGAATCGACAACGTCTGTGTCAGCACGGCGACCAGTTTCGTGTCGATAGGAGAATCGTTTCCACCGTCGGCAGGGGAATTCGCCGAT GAATCGAAACCGTTCATGGCTCCGATCATCGAGTTCTTGGCGGAGAACGATTACCCGCTGCTTGTAAACGTGTACCCTTACTTCGCCTACAAGAGCAACC CCGATCGTATAGATCTGGACTACGCGCTGGGAAACCCGGGCAGAATTTTCGTCGCCGACGGCAGGTTGAGGTACCGGAGCTTGTTCGATGCTATGGTGGA CGCGATGTACGCGGCGGCGGAGAAGGTCCACGTGGGGAAGGTTAGGATGGTTGTTACGGAGACCGGGTGGCCGAGCGCCGGCGACAGAGTGGCGACTATG AAGAATGCGAAGGCGTATGTCAACAACGCGGCGGCGAGGGCCGGTGGTTCCGATGCCGGAACGCCGAGGCGGCCCGGAATCGAAACGGAGACTTACCTGT TTGCTTTGTTTAACGAGGATCTGAAGCCGGAAGGTGAAGAAAGGAATTTCGGGATGTTTTGGCCGGATTTTACGGAGGTTTACCATGTTGATTTTCCCCA GTACTTTAATTAG
AA sequence Show only first row Show all	>Lus10027479 pacid=23144541 polypeptide=Lus10027479 locus=Lus10027479.g ID=Lus10027479.BGIv1.0 annot-version=v1.0 MEVVLGTVNSNLEQLATNPSFAAQWVSANVVPYHPALKLRYVSAGNEVIPGPLAQHVLGATENLDNALKSSGIDNVCVSTATSFVSIGESFPPSAGEFAD ESKPFMAPIIEFLAENDYPLLVNVYPYFAYKSNPDRIDLDYALGNPGRIFVADGRLRYRSLFDAMVDAMYAAAEKVHVGKVRMVVTETGWPSAGDRVATM KNAKAYVNNAAARAGGSDAGTPRRPGIETETYLFALFNEDLKPEGEERNFGMFWPDFTEVYHVDFPQYFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16260			Glycosyl hydrolase superfamily...		Lus10027479 [exp]	0	1
AT1G31790			Tetratricopeptide repeat (TPR)...		Lus10037287 [exp]	3.2	0.6544
AT4G23470			PLAC8 family protein (.1.2.3)		Lus10005117 [exp]	22.1	0.5764
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10033613 [exp]	112.3	0.4819
AT1G35710			Protein kinase family protein ...		Lus10002293 [exp]	130.9	0.4578
AT3G07690			6-phosphogluconate dehydrogena...		Lus10019761 [exp]	164.7	0.4440
AT1G80450			VQ motif-containing protein (....		Lus10026897 [exp]	204.8	0.4263

Compare expression of checked genes

Lus10027479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.