Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52400 405 / 1e-138 CYP715A1 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) AT2G46960 176 / 5e-50 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT5G38450 169 / 1e-47 CYP735A1 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) AT2G46950 163 / 7e-45 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT4G27710 161 / 2e-44 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1) AT5G24910 155 / 4e-42 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) AT5G24900 154 / 5e-42 ELA2, CYP714A2 EUI-like p450 A2, cytochrome P450, family 714, subfamily A, polypeptide 2 (.1) AT2G26710 152 / 3e-41 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT1G67110 150 / 1e-40 CYP735A2 "cytochrome P450, family 735, subfamily A, polypeptide 2", cytochrome P450, family 735, subfamily A, polypeptide 2 (.1) AT3G14640 150 / 2e-40 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039234 [exp] 639 / 0 AT5G52400 653 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Lus10008423 [exp] 167 / 1e-46 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10033555 [exp] 165 / 7e-46 AT5G38450 694 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10017595 [exp] 164 / 2e-45 AT5G38450 697 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10019184 [exp] 159 / 7e-44 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10036822 [exp] 160 / 2e-43 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10025756 [exp] 158 / 3e-43 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10025755 [exp] 159 / 2e-42 AT1G80300 923 / 0.0 nucleotide transporter 1 (.1) Lus10036820 [exp] 154 / 6e-42 AT2G26710 397 / 2e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G145100 [exp] 505 / 6e-178 AT5G52400 646 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Potri.012G142000 [exp] 450 / 3e-156 AT5G52400 622 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Potri.019G064200 [exp] 204 / 1e-60 AT5G24910 652 / 0.0 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.017G114200 [exp] 192 / 5e-56 AT5G38450 724 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.004G100400 [exp] 189 / 5e-55 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.013G160800 [exp] 186 / 8e-54 AT5G24910 468 / 6e-161 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.008G026200 [exp] 174 / 1e-49 AT5G24910 488 / 8e-169 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.008G026300 [exp] 171 / 3e-48 AT5G24910 486 / 5e-168 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.018G070900 [exp] 164 / 1e-45 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.002G134500 [exp] 163 / 5e-45 AT1G75130 540 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10027480 pacid=23144607 polypeptide=Lus10027480 locus=Lus10027480.g ID=Lus10027480.BGIv1.0 annot-version=v1.0 ATGTCGGCGGCTGCCACGTTGGCGGCTTCCCTTCTGGGCTATCTCTGCTGGAACTTGGTTTACGCCTTCTGGGTTTCGCCCCTCGCAGCTTATTACAAGC TCCGCCGCAACGGGTTCGGTGGGCCCGCTCCCAGCTTTCCGCTCGGCAATATTAAGGAGATGACAACCACTCCCAAAATTACCGCNNNNNNNNNNNNCAA AGTAACTGTTCCGTCTTCTTCTGCTGGGGGCGGCTGCGGCGGCGGCGGCGGCATTTCGCATGATATTCACTCCAACGTCTTCCCTTACTTTTCCCAGTGG CAGAACTCCCACGGGAAGGTGTTCGTGTACTGGTTAGGAACCGAGCCGTTCATGTACATAGCCGACCCGGAGTTTTTGAAGGAGATGTCGGCCGGCGTGA TGGGGAAGAGCTGGGGCAAACCTCGGGTTTTCAAACAAGACCGAGAACCCATGTTCGGTAACGGTTTGGTTATGGTCGAAGGCGACGATTGGGTTCGGCA CCGCCACGTCATCACTCCTGCTTTCACCCCTTCCAACTTGAAGGCAATGTCGAGCTTGATGGTGGAGTCGACCACTAGGATGCTCGACGAGTGGGCCACG CTCATCTCCTCCGGAGTGCCAGAGATCGAAGTGGAGAGCCACATCACCGCGACTGCAGGAGAGATCATCGCTAAGACGAGCTTCGGGGTAGGATACAACG AGAGCGGGAGGATGGTGGTGGAGAAGCTGAGGGCAATGCAACTGACCCTCTTCAACTCGAACCGTTACGTGGGAGTACCGTACAGCAAGATCATGTGCCC TAGGAAAACCCTAGATGCAAAGAAGCTAGGGAAAGAGATTGACTCCTTACTCCTCTCCATCATCTCCACCCGGAAGAACAGCTTAAACACCACAACTAAT AACAATAAGGATCTCCTGGGGCTGTTGCTACAAGAGAACCACGCAGATGGCCGGCTTGGGAAGACCTTGACGACACGAGAGCTGGTCGACGAGTGCAAGA CATTCTTCTTCGGAGGGCACGAAACTACAGCGTTGGCTATCTCGTGGACTTTGATGCTTTTGGCTAAGCATCCCGAGTGGCAAGACGAGTTGAGGAAAGA GATTAAGGAGGTTTCGGGAGACAAGACGAGGGTCGATTTCGCCATGCTTTCCTCACTTAAGAAGGTATAG
AA sequence Show only first row Show all	>Lus10027480 pacid=23144607 polypeptide=Lus10027480 locus=Lus10027480.g ID=Lus10027480.BGIv1.0 annot-version=v1.0 MSAAATLAASLLGYLCWNLVYAFWVSPLAAYYKLRRNGFGGPAPSFPLGNIKEMTTTPKITXXXXXKVTVPSSSAGGGCGGGGGISHDIHSNVFPYFSQW QNSHGKVFVYWLGTEPFMYIADPEFLKEMSAGVMGKSWGKPRVFKQDREPMFGNGLVMVEGDDWVRHRHVITPAFTPSNLKAMSSLMVESTTRMLDEWAT LISSGVPEIEVESHITATAGEIIAKTSFGVGYNESGRMVVEKLRAMQLTLFNSNRYVGVPYSKIMCPRKTLDAKKLGKEIDSLLLSIISTRKNSLNTTTN NNKDLLGLLLQENHADGRLGKTLTTRELVDECKTFFFGGHETTALAISWTLMLLAKHPEWQDELRKEIKEVSGDKTRVDFAMLSSLKKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10027480 [exp]	0	1
					Lus10024873 [exp]	2.8	0.9767
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10034300 [exp]	4.2	0.9711
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10029395 [exp]	5.5	0.9709
					Lus10021010 [exp]	5.7	0.9703
					Lus10024872 [exp]	5.7	0.9796
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10030465 [exp]	7.5	0.9612
AT4G23690			Disease resistance-responsive ...		Lus10024714 [exp]	10.5	0.9752
AT1G14550			Peroxidase superfamily protein...		Lus10009900 [exp]	11.1	0.9752
					Lus10005629 [exp]	14.0	0.9754
AT4G08250	GRAS		GRAS family transcription fact...		Lus10008316 [exp]	16.5	0.9691

Compare expression of checked genes

Lus10027480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.