Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52400 206 / 9e-64 CYP715A1 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) AT1G67110 129 / 1e-34 CYP735A2 "cytochrome P450, family 735, subfamily A, polypeptide 2", cytochrome P450, family 735, subfamily A, polypeptide 2 (.1) AT2G26710 127 / 4e-34 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT5G38450 126 / 1e-33 CYP735A1 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) AT5G24900 123 / 1e-32 ELA2, CYP714A2 EUI-like p450 A2, cytochrome P450, family 714, subfamily A, polypeptide 2 (.1) AT5G24910 122 / 2e-32 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) AT1G17060 118 / 5e-31 SHK1, CHI2, SOB7, CYP72C1 SUPPRESSOR OF PHYB-4 7, SHRINK 1, CHIBI 2, cytochrome p450 72c1 (.1) AT3G14610 116 / 4e-30 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14630 115 / 1e-29 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14680 115 / 1e-29 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039234 [exp] 268 / 2e-87 AT5G52400 653 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Lus10017595 [exp] 134 / 2e-36 AT5G38450 697 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10033555 [exp] 132 / 6e-36 AT5G38450 694 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10025756 [exp] 128 / 2e-34 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10025755 [exp] 127 / 1e-33 AT1G80300 923 / 0.0 nucleotide transporter 1 (.1) Lus10017771 [exp] 123 / 1e-32 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10008423 [exp] 122 / 4e-32 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10033044 [exp] 121 / 7e-32 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10010821 [exp] 117 / 1e-30 AT1G75130 522 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G145100 [exp] 230 / 5e-73 AT5G52400 646 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Potri.012G142000 [exp] 214 / 6e-67 AT5G52400 622 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Potri.017G114200 [exp] 126 / 1e-33 AT5G38450 724 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.011G098800 [exp] 123 / 1e-32 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.006G154500 [exp] 123 / 2e-32 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.013G160800 [exp] 122 / 2e-32 AT5G24910 468 / 6e-161 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.018G070900 [exp] 122 / 3e-32 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G101500 [exp] 121 / 8e-32 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101401 [exp] 120 / 1e-31 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099800 [exp] 120 / 1e-31 AT3G14690 612 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10027481 pacid=23144540 polypeptide=Lus10027481 locus=Lus10027481.g ID=Lus10027481.BGIv1.0 annot-version=v1.0 ATGGGTTGGGTAATGAACGAAGTCCTTCGACTCTACTCGCCGGCACCGAACGTACAACGACAAGCGAAAGAAGACATAAAAGTCAACGGCCGGACCATTC CGAAGGGGACAAACATGTGGATCGATGTCGTCGCGATGCACCACGACCGTACCCTGTGGGGGGATGACGTGTACGAGTTCAAGCCGGAGCGGTTCAAGGC GGACCCGCTGTACGGAGGGTGCAAGCACAAGATGGGGTTCATGCCGTTCGGGTTTGGAGGCCGAATGTGCGTCGGGAGGAACTTGACGATGATGGAGTAC AAGATCGTGTTGTCGTTGATTTTGACGAGGTTTTCGTTCTCGTTGTCTCCTTCGTATGATCACTCTCCGGCGATTGTCCTCTCCTTGAGGCCCTCCCACG GCGTTCCTCTCGTGCTCCGGCCGTTGGCATATGCAGAGTTCCAAACCAAGTTGCAGACTTTTAGAGGCCATAACAATCACAGAATTGCTTCTGGGTGGCC ACAATTATCAAATTGGTTTCAATCAGTAACGGACATAACAAATCTGGAAATCGGTTCACGAATCGGAGGCTTTCAGGAGGTCTTCGCCTTTGATCTGAGG GAGCTCGTAAGCTTGCGTCGGAGGGTCTTCTCCATCTCAGTCGCCGGTGCTCACGACTGA
AA sequence Show only first row Show all	>Lus10027481 pacid=23144540 polypeptide=Lus10027481 locus=Lus10027481.g ID=Lus10027481.BGIv1.0 annot-version=v1.0 MGWVMNEVLRLYSPAPNVQRQAKEDIKVNGRTIPKGTNMWIDVVAMHHDRTLWGDDVYEFKPERFKADPLYGGCKHKMGFMPFGFGGRMCVGRNLTMMEY KIVLSLILTRFSFSLSPSYDHSPAIVLSLRPSHGVPLVLRPLAYAEFQTKLQTFRGHNNHRIASGWPQLSNWFQSVTDITNLEIGSRIGGFQEVFAFDLR ELVSLRRRVFSISVAGAHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10027481 [exp]	0	1
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016991 [exp]	3.5	0.9823
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028378 [exp]	3.9	0.9796
AT5G67550			unknown protein		Lus10025583 [exp]	5.1	0.9810
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038526 [exp]	10.2	0.9646
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10039234 [exp]	14.1	0.9558
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Lus10036396 [exp]	17.3	0.9687
AT1G78410			VQ motif-containing protein (....		Lus10023308 [exp]	17.6	0.9498
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Lus10039383 [exp]	18.2	0.9623
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041830 [exp]	19.0	0.9680
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021312 [exp]	20.2	0.9608

Compare expression of checked genes

Lus10027481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.