Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20850 1879 / 0 TPP2 tripeptidyl peptidase ii (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039235 [exp] 2511 / 0 AT4G20850 1960 / 0.0 tripeptidyl peptidase ii (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G142200 [exp] 2043 / 0 AT4G20850 1936 / 0.0 tripeptidyl peptidase ii (.1) Potri.015G145300 [exp] 2008 / 0 AT4G20850 1911 / 0.0 tripeptidyl peptidase ii (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12580 [flax] [poplar] TPPII Tripeptidyl peptidase II PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10027482 pacid=23144623 polypeptide=Lus10027482 locus=Lus10027482.g ID=Lus10027482.BGIv1.0 annot-version=v1.0 ATGCAAAGCTCAGTATTCAAGCATATCCGTTGGGCCCAGACGCCATTTCCTTTTTCATCTAATCATCATCATCATCATCCTCGAACTCCCAGTCTCACTC TCCTTCTTTTCCCTCAAATCATTACCCTGGTCAACGGCAGAAACAAGGGGAGAGTGTTGAGGAAGCAATCGTATTCGTGCGGCCAGTTCGGTATTAGTAG TAGTGCAAGTAGGAGCATTGGGGCGATGCCTATCTCCTCCATTGCGACAGTCTCCGGAGGCGGCGACGCGATCGGAGCTCTCCGGAATTTTAAGCTCAAC GAGTCCACTTTCCTCGCTTCTCTGATGCCGAAGAAGGAGATTGGCGCCGATCGCTTCATCGAAGCTCATCCTGAGTACGATGGCCGCGGTGTCATCATCG CGATTTTCGGTATCAATTCTGGAATGGATCCGGCAGCGGCGGGATTGCAAGTGACCACGGATGGGAAGCCGAAAGTTCTGGACGTTATTGATTGTACTGG AAGTGGTGATATTGACACTTCGAAGGTGGTGAAGGCTGATGCTGATGGCTGCATTCGTGGGGCTTCAGGAGCTTCTTTGGCTGTCAATCCTTCCTGGAAA AACCCTTCTGGAGAGTGGCATGTGGGTTGTAAGTTGGTATATGAACTATATACTGACACATTGACTTCCCGTTTGAAGAAAGAAAGGAAAAAGACATGGG ACGAGAAAAACCAAGAAGAAATTGCCAAGGCTGTGAAGCATCTGTGTGAATTTGATCAGAAACACCCCAAATCAGAGGATGTTAACTTGAAGAGGATCCG TGAAGATCTCCAAAACAAAGTCGATATACTACGGAAGCAGGCTGATAACTATGATGACAAGGGACCTGTCATAGATGCTGTGGTGTGGTATGATGGAGAG TTATGGAGGGCTGCTCTCGATACCCAAAACCTTGAGGATAATCCTGAGTGTGGAAAACTTGCTGACTTTGTTCCACTCACCAACTATAGGATTGAAAGGA AGTTTGGTGTCTTTAGCACGGTAGATGCCTGCACAGCTGTTCTTAACATTTATGACGAGGGAAATATCTTAAGCATTGTAACAGATAGTTCTCCTCATGG CACCCATGTTTCTGGTATTGCTACTGCATTCCACCGGGAGGAACCACTATTGAATGGCATTGCACCTGGAGCACAAATAATATCTTGCAAAATAGGAGAT TCACGGTTAGGTTCAATGGAGACGGGCACTGGCTTGACGAGGGCACTGATAGCAGCTGTTGAGCACAAATGCGATCTTATCAACATGAGTTATGGTGAAC CCGCGTTGCTTCCAGATTATGGCCGCTTTGTTGATCTTGTCAATGAAGTGGTTGATAAACACCGTATTACATTTATCAGTAGTGCTGGTAATAGTGGTCC AGCATTAAGCACTGTTGGTGCTCCTGGTGGTACAAGTACAAATATCATTGGAGTTGGTGCTTATGTTTCTCCGGCAATGGCTGCTGGTGCACATTCTGTT GTTGAAGCTCCTGCTGAAGGCCTTGAATACACTTGGTCTAGTCGAGGACCAACAGTTGATGGTGATCTTGGAGTCTCTGTTAGTGCTCCTGGTGGAGCCG TCGCTCCTGTACCAACATGGACGCTTCAAAATCGTATGCTTATGAATGGCACATCAATGGCATCTCCATCTGCTTGTGGTGGAGCTGCGTTGCTCATTAG TGCTATGAAGGCAGAGGGCATTACTGTGAGCCCCTACACTGTAAGGCAGGCTTTGGAGAATACATCTCTTTATGTTGGAGAATGTTTGGCTGATAAATTA ACCACTGGACAAGGGCTGATGCAAGTTGACAGGGCGTATGAATATGTATGTCAATCCCGGGATATTCCTATTTTTCAGTATAATATAAAGGTCAATCAAT CCGGAAAATCAACTCCTATTTCCAGAGGCATCTACTTGAGAGAGGCTGTTGCTTGCCAACAATCTTCAGAGTGGGCTGTACAAGTTGAACCAAAGTTTCA TGAAGGGGCAAGTAACTTGGAAGAGTTGGTTCCCTTCGAGGAATGTATTGAGTTATATTCTACTGATAAGACCGTTGTGAAGCCTCCCGAATATATCCTT CTAACCCACAATGGGCGCAGCTTCAATTTAGTGGTGGATCCTTCCAAGTTGAGTGTTGGGCTTCATTATTTTGAAGTCTATGGCGTTGATTGCAAGGCAC CATGGAGAGGTCCTGTTTTCAGAATCCCGATTACTATTACAAAGCCTATGATTGTTGAAAATCGCCCTCCTCAGGCTTCGTTTTTAAGGATGTCATTTCT GCCAGGTCATATTGAAAGGAGGTTTATTGAAGTGCCACTTGGTGCTAGTTGGGTTGAAGCTACTGTACGAGTTTCGGAGTTTGACACTACGCGACGATTC TTCCTTGATACCTTGCAGATTTGTCCCCTTCGAAGACCAATCAAATGGGAGAGTGTTGCTACATTTTCTTCTCCCGGTGCCAAAACGTTTTCTTTTCGTG TGGTGTCTGGGCAGACAATGGAACTAGCTGTTGCTCAGTTCTGGTCGAGTGGCTTGGGAAGTCGTGATACCACTATTGTTGACTTTGAGATTTCTTTCCA TGGAATTGATGTCACTAAAGAGGAAATTATACTCGATGGAAGTGACGCCCCTGTTAGAATTGATACTGAAACTCTTTTGGCATCCGAAAAGCTTTCTCCT GTTGCCCTTCTAAATAAGCTAAGAGTTCCATATCGACCAGTAGATTCTAAGCTTATTACTCTGACTGGAACCCGTGACAAATTACCCTCAGGAAAACAGA CGCTAGCACTAACGTTAACGTATAAGTTCAAATTGGAAGATGGAGCTGAAGTAAAACCTCAAGTTCCGCTCCTTAATAATAGGATATACGATACTAAATT TGAGTCGCAATTCTTTATGATTTCTGATGCGAACAAGCGTGTATATTCAGTCGGTGATGTTTATCCAGCAGCTTCAAAGCTCCCCAAAGGTGACTATACA CTGCAATTGTATCTAAGGCATGATAACGTGCAGTATTTAGAAAAATTAAAGCAGTTGGTGCTGTTCATCGAGAAAACTTTGGAGGACAAGGATGTCATTC GATTGAACTTTTTCTCTGAACCCGATGGCCCTATAATGGGCAACGGTAGTTATAAATCCTCAGAGTTGGTTCCAGGAAGGAAGCAATATACTTGGCTCCC CCCCGCAAAAGACAAGCTCCCTAAGAATGCTCCTCAAGGATCAGTTCTGCTCGGAAAAATTTCTTATGGCAGGTTGTTGTCTGGACAAGAAGCAGGCAAA AGTGGGCAGAAGAGTCCTGTATCATATCCCATCTCTTATGTTGTGCCTCCGAATAAGGTTGACGAGGACAAGCAGAAAGGTTCTTCAGCTTCTTCCACAA AATCAGTTTCCGAACGTCTAGAAGAAGAGGTTCGAGATGCAAAGATAAAGATCTTGGGAAGCTTAAAGCAGGATACAGAGGAGGAACGCTCAGAATGGAA AAAGCTCTCCGATGCCCTCAAGACTGAATATCCTCAACACACTCCATTGCTTTCTAAGATTCTAGAGGGCTTACGTTCTCGAAGTAAGATCGATGACAAG ATTAAGCACAGTCAAGAGGTCATAGCGACAGCAGATGAGGTGATCAGCAGTGTCGACAAAGATGAGTTGGCGAAATTCTTTTCGTACAAGCCTGACCCAG AAGACGAGGAGGCAGAGAAAATGAAGAAGAAGATGGAGACTACTAGAGATCAACTAGCAGAAGCGCTTTACTCAAAGGGTCTGGCCCTCTCCGAAATCGA ATCTCTCAAGAATGGCGATAAAACTGAAACAGTAGCAGTAGCAGTAGCAGAAGGCACCATAGATGAATGGACAGATGTGCGAAAAGAAGCATCAGAAGAG TCTGGCTCAAAGCAAGATTCTTTCGAAGACACTTTCAAAGAACTACAGAAATGGGTCGATGTAAAGTCGTCTAAGTTCGGCACCCTCTATGTCCTCCGCG AGAAGCGACGTGGGAGGCTTGGAACAGCCCTCAAGGTATTAAACGACATGATCCAAGAAGACGGAGACCCTCCGAAGAAAAAACTCTTCGAGATGAAGCT GTCATTACTGGAGGAGATCGGATGGACTCATCTCACCGCCTACGAGAAACAATGGATGCACGTCCGTTTCCCGTCAAGCCTCCCTCTTTTCTGA
AA sequence Show only first row Show all	>Lus10027482 pacid=23144623 polypeptide=Lus10027482 locus=Lus10027482.g ID=Lus10027482.BGIv1.0 annot-version=v1.0 MQSSVFKHIRWAQTPFPFSSNHHHHHPRTPSLTLLLFPQIITLVNGRNKGRVLRKQSYSCGQFGISSSASRSIGAMPISSIATVSGGGDAIGALRNFKLN ESTFLASLMPKKEIGADRFIEAHPEYDGRGVIIAIFGINSGMDPAAAGLQVTTDGKPKVLDVIDCTGSGDIDTSKVVKADADGCIRGASGASLAVNPSWK NPSGEWHVGCKLVYELYTDTLTSRLKKERKKTWDEKNQEEIAKAVKHLCEFDQKHPKSEDVNLKRIREDLQNKVDILRKQADNYDDKGPVIDAVVWYDGE LWRAALDTQNLEDNPECGKLADFVPLTNYRIERKFGVFSTVDACTAVLNIYDEGNILSIVTDSSPHGTHVSGIATAFHREEPLLNGIAPGAQIISCKIGD SRLGSMETGTGLTRALIAAVEHKCDLINMSYGEPALLPDYGRFVDLVNEVVDKHRITFISSAGNSGPALSTVGAPGGTSTNIIGVGAYVSPAMAAGAHSV VEAPAEGLEYTWSSRGPTVDGDLGVSVSAPGGAVAPVPTWTLQNRMLMNGTSMASPSACGGAALLISAMKAEGITVSPYTVRQALENTSLYVGECLADKL TTGQGLMQVDRAYEYVCQSRDIPIFQYNIKVNQSGKSTPISRGIYLREAVACQQSSEWAVQVEPKFHEGASNLEELVPFEECIELYSTDKTVVKPPEYIL LTHNGRSFNLVVDPSKLSVGLHYFEVYGVDCKAPWRGPVFRIPITITKPMIVENRPPQASFLRMSFLPGHIERRFIEVPLGASWVEATVRVSEFDTTRRF FLDTLQICPLRRPIKWESVATFSSPGAKTFSFRVVSGQTMELAVAQFWSSGLGSRDTTIVDFEISFHGIDVTKEEIILDGSDAPVRIDTETLLASEKLSP VALLNKLRVPYRPVDSKLITLTGTRDKLPSGKQTLALTLTYKFKLEDGAEVKPQVPLLNNRIYDTKFESQFFMISDANKRVYSVGDVYPAASKLPKGDYT LQLYLRHDNVQYLEKLKQLVLFIEKTLEDKDVIRLNFFSEPDGPIMGNGSYKSSELVPGRKQYTWLPPAKDKLPKNAPQGSVLLGKISYGRLLSGQEAGK SGQKSPVSYPISYVVPPNKVDEDKQKGSSASSTKSVSERLEEEVRDAKIKILGSLKQDTEEERSEWKKLSDALKTEYPQHTPLLSKILEGLRSRSKIDDK IKHSQEVIATADEVISSVDKDELAKFFSYKPDPEDEEAEKMKKKMETTRDQLAEALYSKGLALSEIESLKNGDKTETVAVAVAEGTIDEWTDVRKEASEE SGSKQDSFEDTFKELQKWVDVKSSKFGTLYVLREKRRGRLGTALKVLNDMIQEDGDPPKKKLFEMKLSLLEEIGWTHLTAYEKQWMHVRFPSSLPLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10027482 [exp]	0	1
AT1G28260			Telomerase activating protein ...		Lus10014007 [exp]	1.0	0.9397
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10021253 [exp]	2.0	0.9340
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10018895 [exp]	3.0	0.9076
AT5G46190			RNA-binding KH domain-containi...		Lus10023300 [exp]	3.2	0.9028
AT2G01690			ARM repeat superfamily protein...		Lus10021813 [exp]	3.6	0.8994
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	4.9	0.9276
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Lus10012769 [exp]	5.5	0.9146
AT1G11060			WAPL (Wings apart-like protein...		Lus10001211 [exp]	6.5	0.9117
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10003405 [exp]	6.9	0.9123
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	8.2	0.9161

Compare expression of checked genes

Lus10027482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.