Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49050 555 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT4G00500 484 / 2e-169 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G37710 424 / 2e-146 alpha/beta-Hydrolases superfamily protein (.1) AT2G42450 54 / 2e-07 alpha/beta-Hydrolases superfamily protein (.1) AT4G16070 46 / 4e-05 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT3G14075 44 / 0.0002 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039240 [exp] 702 / 0 AT3G49050 624 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037847 [exp] 520 / 0 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10030391 [exp] 450 / 6e-157 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10010983 [exp] 244 / 5e-78 AT5G37710 384 / 3e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10000445 [exp] 243 / 1e-77 AT5G37710 385 / 1e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10000444 [exp] 144 / 2e-41 AT5G37710 191 / 5e-60 alpha/beta-Hydrolases superfamily protein (.1) Lus10005809 [exp] 97 / 2e-23 AT5G37710 144 / 1e-41 alpha/beta-Hydrolases superfamily protein (.1) Lus10015680 [exp] 57 / 2e-08 AT3G14075 744 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10008121 [exp] 56 / 4e-08 AT3G14075 763 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G142700 [exp] 586 / 0 AT3G49050 654 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G145900 [exp] 546 / 0 AT3G49050 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G083600 [exp] 538 / 0 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G159200 [exp] 524 / 0 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G130000 [exp] 434 / 6e-150 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G086900 [exp] 429 / 8e-148 AT5G37710 599 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G067900 [exp] 56 / 6e-08 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.005G222000 [exp] 51 / 1e-06 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G005800 [exp] 43 / 0.0004 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03893 [flax] [poplar] Lipase3_N Lipase 3 N-terminal region CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10027485 pacid=23144527 polypeptide=Lus10027485 locus=Lus10027485.g ID=Lus10027485.BGIv1.0 annot-version=v1.0 ATGTGTATAATATGTGGGATACCTCTCCTAGAATGTGTGTACTGTCTAGCCTGCGTTAGATGGGCATGGAAACGCTGTCTCTACACAGCCGGACACGACA GTGAAACATGGGGACTCGCATCTCCCCACGAATTCGACCCGGTCCCGCGAATGTGTCGGTACATTCTATCAGTCTACGAGGACGATCTCTTCAACCCGCA ATGGGAGCCTCCAGGAGGGTACGGAATCAACCCTGACAGTGTCAAGCTAAAGAGGACTTATTTAGACACTCAAGGGAGGGCCCCACCTTACTTGCTCTAC CTCGATCACAAGCATTCCGATATAGTTCTAGCAATTCGAGGGCTGAATCTGGCAAGGGAGAGCGATTACAAGCTGCTGCTGGATAATAAGTTGGGGGAGA TGAAGGTTGCTGGCGGGTATGTTCATAATGGGCTTATGAAGGCTGCTGGCTGGATTCTTGAGTCTGAATTTGAGGTTTTGAAGGAAGTTTTGAGGGAGTT TTCGAGGTACAGTCTTACTTTCGCGGGGCATTCGCTTGGAGCGGGTGTCGCTGCGATGTTGGCTCTTGTTGTGGTTTTGAACGGTGGCGGGAAATTGGGG TGCATTGAGAGGAAGAGGATCAGGTGCTTTGCTATTGCGCCTGCGAGATGTATGTCGTTGAATTTGGCTGTTCGATATGCGGATGTGATCTACTCGGTTG TGCTTCAGGATGATTTCTTGCCCCGGACTGCAACACCGTTGGAAGACATATTCACTTCACTCTTCTGTTTGCCATGTCTACTATGCCTAAGGTGCATGAA GGACACCTGCATCTCGGAACAACAGATGATCAAAGATCCCAGGAGGCTCTATGCACCGGGTCGCCTCTACCACATTGTCGAACGAAAGCCTTTCAGAATG GGAAGGTTCCCACCAGTTGTGAGGACAGCAGTACCAGTAGACGGGAGGTTCGAGCACATAGTTCTATCATGTAACGCTATTTCTGATCACGCCGTCATAT GGATCGAAAAGGAAGCACAACGAGCTCTCAATCTAATGTTGGAGAAGGATGGAGCCACGGAGATCCCGGTAAAGCAAAGGATGGATCGAGAGGAGACGGT GGCTCGAGAGAACATGGAAGCATTGCACAGAGCCGTCACGTTGGAAGTGCCTCATTCGCAGGCCCCGTCTCGGTATGGAACATTTGGTGGTGGTGAGGTT GAAGAAGAGGAGAAAGATGCCGTAGTTCATCATCTACTGGGATGGATTGATCCGGCCAGCATGTTCTCCTCCCGAAATCGACCTGTCCCTATTGATGATA ATGTAACATCAATGTCAATCTCTGCAGATATCTGTTAG
AA sequence Show only first row Show all	>Lus10027485 pacid=23144527 polypeptide=Lus10027485 locus=Lus10027485.g ID=Lus10027485.BGIv1.0 annot-version=v1.0 MCIICGIPLLECVYCLACVRWAWKRCLYTAGHDSETWGLASPHEFDPVPRMCRYILSVYEDDLFNPQWEPPGGYGINPDSVKLKRTYLDTQGRAPPYLLY LDHKHSDIVLAIRGLNLARESDYKLLLDNKLGEMKVAGGYVHNGLMKAAGWILESEFEVLKEVLREFSRYSLTFAGHSLGAGVAAMLALVVVLNGGGKLG CIERKRIRCFAIAPARCMSLNLAVRYADVIYSVVLQDDFLPRTATPLEDIFTSLFCLPCLLCLRCMKDTCISEQQMIKDPRRLYAPGRLYHIVERKPFRM GRFPPVVRTAVPVDGRFEHIVLSCNAISDHAVIWIEKEAQRALNLMLEKDGATEIPVKQRMDREETVARENMEALHRAVTLEVPHSQAPSRYGTFGGGEV EEEEKDAVVHHLLGWIDPASMFSSRNRPVPIDDNVTSMSISADIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49050			alpha/beta-Hydrolases superfam...		Lus10027485 [exp]	0	1
AT4G34215			Domain of unknown function (DU...		Lus10019817 [exp]	5.7	0.7937
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031154 [exp]	10.5	0.8068
AT1G64980			Nucleotide-diphospho-sugar tra...		Lus10005005 [exp]	13.5	0.7881
AT3G09350		Fes1A	Fes1A (.1.2.3)		Lus10023786 [exp]	13.6	0.8006
AT3G07090			PPPDE putative thiol peptidase...		Lus10025931 [exp]	14.3	0.7920
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Lus10001835 [exp]	24.0	0.7509
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10005953 [exp]	25.7	0.7912
AT2G23090			Uncharacterised protein family...		Lus10014734 [exp]	28.3	0.7289
AT4G05460			RNI-like superfamily protein (...		Lus10038528 [exp]	28.4	0.7394
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10001568 [exp]	32.5	0.7899

Compare expression of checked genes

Lus10027485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.