Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23910 320 / 3e-98 ATP binding microtubule motor family protein (.1) AT5G02370 226 / 4e-64 ATP binding microtubule motor family protein (.1) AT5G27950 108 / 2e-24 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 109 / 3e-24 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65930 108 / 9e-24 PKCBP, ZWI POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) AT5G27550 105 / 5e-23 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G73860 104 / 8e-23 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G28620 104 / 1e-22 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G47500 103 / 2e-22 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G22610 103 / 2e-22 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039243 [exp] 1423 / 0 AT5G23910 396 / 3e-127 ATP binding microtubule motor family protein (.1) Lus10024395 [exp] 219 / 1e-61 AT5G02370 593 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025349 [exp] 169 / 2e-43 AT5G02370 536 / 0.0 ATP binding microtubule motor family protein (.1) Lus10009073 [exp] 114 / 1e-25 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019245 [exp] 110 / 1e-24 AT3G49650 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025275 [exp] 110 / 2e-24 AT3G45850 981 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10011579 [exp] 109 / 3e-24 AT3G49650 950 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018120 [exp] 105 / 7e-23 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10004487 [exp] 103 / 1e-22 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G146000 [exp] 401 / 2e-128 AT5G23910 439 / 2e-144 ATP binding microtubule motor family protein (.1) Potri.006G085300 [exp] 228 / 2e-64 AT5G02370 660 / 0.0 ATP binding microtubule motor family protein (.1) Potri.013G020700 [exp] 110 / 8e-25 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G150800 [exp] 108 / 1e-23 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G033900 [exp] 105 / 3e-23 AT5G27950 676 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G146700 [exp] 104 / 1e-22 AT5G65930 1864 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Potri.008G221400 [exp] 102 / 4e-22 AT3G16630 1167 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G106000 [exp] 102 / 5e-22 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G013500 [exp] 101 / 8e-22 AT3G16630 1141 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G455300 [exp] 100 / 2e-21 AT5G65930 1881 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10027488 pacid=23144510 polypeptide=Lus10027488 locus=Lus10027488.g ID=Lus10027488.BGIv1.0 annot-version=v1.0 ATGGCAACACCAACTCCGAACCATGCCGATCGGTCCACTGTGCCACTGAGTCGAAAGGTTAGAGTGGTGGCGAAGATCCGGAGTTTGACTAATTCAGAAG TCTTGCCGGGAAATCCGGCCCCCGCGGCATCGTGGATTTCTGTGAGCAAGCCTAACGGAGACGATTCTGACAGGGTGACAGTTACCTTGGGCGAGCAATC AGCAAGTTCGAAGGAGTGTTTCGAGATTGGTTACTGTTACGAAGAGACAGAAGGTAATGAAGTGATTTTCAAGAGAGATGTGAAGCCTTTGCTGCCCGGA GTGTTCAATGGTCATAATGCAACTATTGTTGCTTGTGGAGCTAGAGATTCTGGGAAAACCCACTTTGTGCAGGGTACTGCTGAGGAACCAGGCTTGACAA CTTTATGCATGAACGAAATTCTTCGGATGGCGGAGGAGCATAAAAAGTCCGTCATAATTTCGTGTTTTGAGATTTTGCAAGAACGTGCTCATGATTTGTT AGAACCGAAGACGGAGGAAGTATTAGTTTTGAAAGATGGCCAAGGACGAGTGCAACTTAAAGGACTTTCTTGTGTCCCAGTGAAATCTATGATGGAGTTT CACAAACTGTATTCTGGACGGAATCGGACAGTACGTAGACTGAATCAGAAGAACACAACTCCACTCCCTTCAAGAAGCACGAAAGGGTTGATTGTGTATA TATCATCACATGGTGAAAAGTTGGTCAGAGGTTCTGTGGGAAAGATAAGCTTTGTCGAGTTAGCAGGTTATGAGGATGCAAGAAGAATAAGCAATGCCTG TAACTTCAGCGAGAATGCACAAATCAACAAGTCTATAAATGCACTATTCAAGGTGTTCTATTCTTTGCATGCCAATGAAACGCATGTGGCATATCGGGAG AGTAAGCTCAGCCGTATGCTAGAAGATTCACTTGGAGGGAAAAGTAGAATATTGGTTGTTACATGCTTGAACCCATTTTCCTGCCAAGACTCCATAAACA TGTTGAATCTGGCTTCTCGTTGCTGTCAAAGCACTGACCGGGTTGGGTTGGATTCTGCTAGAAAAACAAACAGCACGACAAGATCAAAGGTTTTTGCTTC ACATAAGAGCAGGCTACCTGGGACCGGTAGTGTTTCCTCTATGAGGAAGCAACAAACTCCCTCCAATTTGCCTGTTCCTGGTAGGAAAGCCGGTGGAAAC GCTTCCGCCTTGAAAGCAAGGAGGTTATTTGATGACAAATATCATGAGAAATCTGAGAAGAAGAGAAATCATCCTGCTGTTGCTTCGGTAACAGAACTTT GTTCTCAGGAAGAGGCCTGTTCTTCTTCCATTAGCTTGACTACAGCTGCAAGTTCTGTACAAGAAGCGAGACTTTCATATGGTACGCAAGAAGTTTCTTC GTCGAATTTCGAGGACTTCCCTTCAGCTTCTTTGGACGTGCAGGAATCTCTGTCGATAGAAGTTTCTGGTCCATGTACAAGTACTACTTCAATTGACACG GTTTCAATGGGGCAAAGTGTAGATAAACCTGTGGACATAACACCAGCCACTAAAACATTATCGGTGGTTGAAGAAGGTCGAAGTTTGGATGAGAAGGAGA ATGACAAGTCATTGGTGAATGGAGGCGAATCTCCACCAATTAGCACGCGGTTGCAGGAGATCTCAAATACTCTGAAGCAGCTCTTTAATTCAACCCCATC ATACCAAGCTATACCTTTTACCAACGACCCTTCACTCCTCCAAGATCAAACTTCAACTCCTTCAATAGGGTCAATGACGTCAGAGCTCATTACGATAGCT AATGACACCGTGGGCCCATTGTACGATGTGATGCCTTCTAGCAACGACCCTTCATTCCTCCTGGATGATCAAACTTCAACACCTTCCAAAGGGCCATTGA CACCAGAGCTCGATACAACAGCCAATGACACCATGGACTTCATAAGGGAGATCCCTTCTAGCGACGACCCTTCAGTCCTCCAGGATCAAACTTCTACTCC TTCAATAGGGCCACTGACACCAAAGCTCAATACATCAGCCAATGATACCTTGGACTTCGCAACGACAATCACTCACACTACCAACGATCCTTTGCCTCCC ATTTCCACCATTTCCATTGAACCAAGAACGCCCGAATGCAACATAAGACGAGTCAATAACAACATCTTGGACATTGCGAGCTTCTGCAGCCCCTGGGAGA AGCTGAACAGAAGCAACTGCGGAGTGAAGAACTCACTGGTTCAGGAGTATCTGAGCTTTATAAACACAGCTAACAAGGAAGATTTGAAGAAACTGAAGGG GATCGGAGAAAAGCGTGCTACCTATATTATGGAATTGCGTGAAGATTCGCCATTCAAGGACCTTGACGAGTTGAAAGATGTTGGGATGTCAGCTAAGCAG ATCAAAGACATGATGGGGAAGAATGTAGCTGCAGGGCTTTTCAGCTAG
AA sequence Show only first row Show all	>Lus10027488 pacid=23144510 polypeptide=Lus10027488 locus=Lus10027488.g ID=Lus10027488.BGIv1.0 annot-version=v1.0 MATPTPNHADRSTVPLSRKVRVVAKIRSLTNSEVLPGNPAPAASWISVSKPNGDDSDRVTVTLGEQSASSKECFEIGYCYEETEGNEVIFKRDVKPLLPG VFNGHNATIVACGARDSGKTHFVQGTAEEPGLTTLCMNEILRMAEEHKKSVIISCFEILQERAHDLLEPKTEEVLVLKDGQGRVQLKGLSCVPVKSMMEF HKLYSGRNRTVRRLNQKNTTPLPSRSTKGLIVYISSHGEKLVRGSVGKISFVELAGYEDARRISNACNFSENAQINKSINALFKVFYSLHANETHVAYRE SKLSRMLEDSLGGKSRILVVTCLNPFSCQDSINMLNLASRCCQSTDRVGLDSARKTNSTTRSKVFASHKSRLPGTGSVSSMRKQQTPSNLPVPGRKAGGN ASALKARRLFDDKYHEKSEKKRNHPAVASVTELCSQEEACSSSISLTTAASSVQEARLSYGTQEVSSSNFEDFPSASLDVQESLSIEVSGPCTSTTSIDT VSMGQSVDKPVDITPATKTLSVVEEGRSLDEKENDKSLVNGGESPPISTRLQEISNTLKQLFNSTPSYQAIPFTNDPSLLQDQTSTPSIGSMTSELITIA NDTVGPLYDVMPSSNDPSFLLDDQTSTPSKGPLTPELDTTANDTMDFIREIPSSDDPSVLQDQTSTPSIGPLTPKLNTSANDTLDFATTITHTTNDPLPP ISTISIEPRTPECNIRRVNNNILDIASFCSPWEKLNRSNCGVKNSLVQEYLSFINTANKEDLKKLKGIGEKRATYIMELREDSPFKDLDELKDVGMSAKQ IKDMMGKNVAAGLFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23910			ATP binding microtubule motor ...		Lus10027488 [exp]	0	1
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022679 [exp]	1.4	0.9842
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10016397 [exp]	2.0	0.9799
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10042739 [exp]	2.4	0.9782
AT5G23910			ATP binding microtubule motor ...		Lus10039243 [exp]	3.7	0.9741
AT1G71680			Transmembrane amino acid trans...		Lus10036933 [exp]	4.9	0.9718
AT5G60930			P-loop containing nucleoside t...		Lus10000762 [exp]	4.9	0.9772
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028433 [exp]	5.9	0.9759
AT3G21620			ERD (early-responsive to dehyd...		Lus10030024 [exp]	6.0	0.9746
AT2G22610			Di-glucose binding protein wit...		Lus10035954 [exp]	6.0	0.9705
AT3G05330		ATN ,ATTAN	A. THALIANA TAN1, TANGLED, cyc...		Lus10004488 [exp]	6.8	0.9577

Compare expression of checked genes

Lus10027488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.