Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49055 243 / 1e-74 unknown protein AT1G24560 116 / 1e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039244 [exp] 209 / 9e-66 AT3G49055 89 / 2e-21 unknown protein Lus10038257 [exp] 129 / 6e-32 AT1G24560 736 / 0.0 unknown protein Lus10025844 [exp] 127 / 6e-31 AT1G24560 750 / 0.0 unknown protein Lus10029143 [exp] 116 / 2e-27 AT1G24560 613 / 0.0 unknown protein Lus10013022 [exp] 115 / 5e-27 AT1G24560 624 / 0.0 unknown protein Lus10021563 [exp] 65 / 2e-13 AT3G49055 55 / 1e-10 unknown protein Lus10011651 [exp] 64 / 8e-13 AT3G49055 47 / 9e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G146100 [exp] 391 / 3e-131 AT3G49055 191 / 1e-54 unknown protein Potri.010G049400 [exp] 134 / 2e-33 AT1G24560 642 / 0.0 unknown protein Potri.008G183800 [exp] 125 / 1e-30 AT1G24560 691 / 0.0 unknown protein Potri.008G184600 [exp] 116 / 7e-29 AT1G24560 302 / 2e-97 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027489 pacid=23144536 polypeptide=Lus10027489 locus=Lus10027489.g ID=Lus10027489.BGIv1.0 annot-version=v1.0 ATGGAATCTGTCTCCGGAACCGCTTCACCGCCACCTCAAATCGACCTCTCTGATTACAGCAGCGTCGTCCAAGAGCTGCAGTCACTACGCCGGTCCTACG ATGAGCTTCAGTCAAGACATTCGGCCGTGACGAAACAGAGAGGCGAGTTACTGAAGCGGAACTCCGATCTAGAGATTTCCGTCGAAGAAACTTCACTCGA GCGGGATCTCCTCTATGACCTCATCCGCCAGCTGGATGTCTTCTGCAAGGAGAAACAGTCGGAAATTGAACGGATGATGTTCGACGAAATGTCGACAAGA AAAGGACTCGAAACGGAAGTGGAAATTTCTCGTCAAAGGATCGAACAGCTAGAATCCGAGATCAGAGATAAGGAAAGCCAGAGTGAGTTCATACTAACAT CTCTGCTCAACGATCTACGGGAGATAATATCCCACTTTGAAGATTCTAAGAGTGAGCGGATCAGCGTAGAAGAAGCAGACGACGAATCTAGACTTAATTC GATCAGGAGATTAGCTAGCGAGGTAGAAGCAAAAGTGGATGAGTGCAAGAAGAGGAAGAAGGGGCTGGAGGACAGGATCATGAGCTTGACGGAAGAGAAT CGAGATCTGAACAGCTTGCTGAGAGCTGCGTTGATGGAGAAGGAGGCAGCGGCGAGGAATCTCAAGGAGCTGAAAGGGAACAATGAGCAGAAGAGTTTCG CTCTGTTACAGATTGCCGAGCGGGGATTGCAGAAGTTCGGGTTCATAATCGGAAGCAGCAGCAGCGAACATACAGTGGAAGATTCCGAACCTTCTTCAAA CGAAGAAGAAATCGTTACTTTGGCTTCGACTGTCGAAAGAGTGACGAAAAACTTAAGGCTGGAGATTACTCAACTAAGGAGATCGCTGGAGGATTCTAGA TCAGATTGCGAGCGGTTGCAGAGCTTGGTAGATAAACAAGCTCAGAAGATCGCCGAAAACGCACTGTATATACAACAGTTGGAAGACAGAGAAAGAGCTT TAGCTCAGCATGTGGAGGAACTTACTGAAGAGATCAAAGAAGCCGAGGTAGAAGCAGGAAGGTGGATGGAAGCTTGTGAGTTAGAAGTGGAAGCTGGGAA GAAAGAGGTTGCAGAACGGGACAAAGTGGTTTTGATCTTGAAGCGTGAACTGGAGAAGACAAGGACTGCGCTGGGGATATCGAACGGCAAGCTTAAGCTG AAGGAAGAGGTTGCAGCTGCAGCCATGGCTGCTCAGAAAGCGGCCGAGCAGTCCCTGCGGCTGGCTGATATCAGGGCTACCGAGTTCCGTAACAGGATGG AGGAGCTGAGTAGACAACTGGAAGCAATCGAGAATGGAAATCGAGATCGAAGGAAAGTTAGGCATAGGTGTTGGCCATGGCAGAGTTTGAGAGATAGCAT GAACAATGCTGGACAGAGGCGGCTTCCAGAAATGCAAGCTTTGCTCCCTTAG
AA sequence Show only first row Show all	>Lus10027489 pacid=23144536 polypeptide=Lus10027489 locus=Lus10027489.g ID=Lus10027489.BGIv1.0 annot-version=v1.0 MESVSGTASPPPQIDLSDYSSVVQELQSLRRSYDELQSRHSAVTKQRGELLKRNSDLEISVEETSLERDLLYDLIRQLDVFCKEKQSEIERMMFDEMSTR KGLETEVEISRQRIEQLESEIRDKESQSEFILTSLLNDLREIISHFEDSKSERISVEEADDESRLNSIRRLASEVEAKVDECKKRKKGLEDRIMSLTEEN RDLNSLLRAALMEKEAAARNLKELKGNNEQKSFALLQIAERGLQKFGFIIGSSSSEHTVEDSEPSSNEEEIVTLASTVERVTKNLRLEITQLRRSLEDSR SDCERLQSLVDKQAQKIAENALYIQQLEDRERALAQHVEELTEEIKEAEVEAGRWMEACELEVEAGKKEVAERDKVVLILKRELEKTRTALGISNGKLKL KEEVAAAAMAAQKAAEQSLRLADIRATEFRNRMEELSRQLEAIENGNRDRRKVRHRCWPWQSLRDSMNNAGQRRLPEMQALLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49055			unknown protein		Lus10027489 [exp]	0	1
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10034139 [exp]	4.9	0.7073
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10026838 [exp]	14.3	0.7062
AT1G05730			Eukaryotic protein of unknown ...		Lus10025588 [exp]	16.5	0.6837
AT1G13570			F-box/RNI-like superfamily pro...		Lus10016472 [exp]	18.9	0.6378
AT1G51610			Cation efflux family protein (...		Lus10034818 [exp]	27.9	0.6621
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10031992 [exp]	29.6	0.6388
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Lus10027378 [exp]	29.7	0.6678
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10039975 [exp]	29.8	0.6359
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10037214 [exp]	33.8	0.6746
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	36.7	0.6261

Compare expression of checked genes

Lus10027489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.