Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49060 512 / 5e-171 U-box domain-containing protein kinase family protein (.1.2) AT2G45910 439 / 1e-142 U-box domain-containing protein kinase family protein (.1) AT5G61560 302 / 7e-91 U-box domain-containing protein kinase family protein (.1.2) AT4G25160 295 / 5e-88 U-box domain-containing protein kinase family protein (.1) AT5G51270 283 / 2e-83 U-box domain-containing protein kinase family protein (.1) AT5G61550 274 / 5e-80 U-box domain-containing protein kinase family protein (.1.2) AT5G57035 271 / 2e-79 U-box domain-containing protein kinase family protein (.1) AT2G19410 269 / 1e-78 U-box domain-containing protein kinase family protein (.1) AT5G65500 247 / 1e-70 U-box domain-containing protein kinase family protein (.1) AT1G72760 219 / 2e-61 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039245 [exp] 1352 / 0 AT3G49060 556 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10014772 [exp] 461 / 4e-150 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036362 [exp] 461 / 5e-150 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036363 [exp] 442 / 2e-145 AT2G45910 528 / 9e-178 U-box domain-containing protein kinase family protein (.1) Lus10016557 [exp] 363 / 2e-113 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10040825 [exp] 343 / 4e-106 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10036359 [exp] 320 / 1e-97 AT2G45910 598 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10018835 [exp] 297 / 3e-89 AT2G45910 522 / 4e-174 U-box domain-containing protein kinase family protein (.1) Lus10024212 [exp] 226 / 3e-63 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G143100 [exp] 751 / 0 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Potri.002G160300 [exp] 465 / 1e-153 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160200 [exp] 462 / 1e-150 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.014G084900 [exp] 439 / 1e-141 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.001G239100 [exp] 361 / 8e-114 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.009G030400 [exp] 317 / 6e-96 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.006G147000 [exp] 273 / 1e-80 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 273 / 9e-80 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.007G011500 [exp] 224 / 7e-64 AT5G65500 575 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.018G002400 [exp] 222 / 5e-62 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10027490 pacid=23144487 polypeptide=Lus10027490 locus=Lus10027490.g ID=Lus10027490.BGIv1.0 annot-version=v1.0 ATGGGGAGCGTCGAGTCGGAGACAGAGGACACGATTTACGTGGCGGTGGGGAGGAACTCCGACGAGAGCAAGTCGACGCTGCTGTGGACGGTCCGGAATT TCCCAGGGAAGAAGATTTGCCTCCTACATGTCCATCAACCTCCTGCAAGTCTCGCCGTTCGTTTCTCAGACAGACAGCTAGCTGTTGTTAACAAAGCTGT AAAACACGGAGATAATGGATCGGACGAGTTGGAGAGGATAAAGATAGATGAAGTGTTGAATCAATACTTCCTCATTCTTGCTCAAGAAGGGGTTGAACCT GATAAAGTGTGGATCGAGGCAAGGAGTATTGAGGAAGGGATAGTCGAGATTGTCGATCGCTGCTACGTGAAGTGGCTTGTCATGGGTGCAGCAGCTGATA AGTACTATTCAAACAGGGAAGGTAGGAATGAAATATTCGACGCAGATAATGATCTTCCATTGCTCCTGACTTATTCAGATTCTGTATCTGAGTCACCAGA GAGTTTGAAACCAGAATCTCTGTCAGGATTTGATATGTCACCAGATGCCGTTGACAATGCTGATGGAATTGAAGGTTTGTTAAGAAATTTTGACGGTAAC TGTAGCTTGGACTTTCATCAACCGCTTGAAATGACACTGCCATTGCTTGAGTATGAGGCGGAGGAGATTAGGGACCAAATAGAAGAAGCGAGTACAAGTA GCTTAGAGGAAACAGTTATGGATACTTGTGACCTAAAGAAGCTGGCCTTTGAGGAGGTAGTTAAGCGATGGAAAGAGGAAGAGAATGCAATGGAGGCAAA ATGCAAGGCAAAATCCTTCTCAAGGTCAAATTTTAACTGTGTACAAAAGCAGGCAAAAGCACTAGAAAGCTTGTGCATCAAAGAAATTAGCCTGAGAAAA GAGATGGAGGAAACATTGGCTAGAGAAAAGAACGCCATAGAAAGGACGAGGAATCAACACGACAAGTTCCTGCAAGAACTACAGCTGGTCAAGGAGCAGA ATGCCACACTTGAAAAGCAGTTTGGAGAAGCGAATAGTGTGGTGCAGGAACTGGAGGAGAAGATCATGTCAGCTGTTGAACTTCTGATAAGTTTCAGGAA GAAGAGAGACGATTCCAGAGTGGAATGTGAAAATGCTAGAAGGGAAGTGAGAAGACTACAGGAGTTGGGAAAAGTCGACACCACACGCTTATTCAGGTCA GAAATTCTCGATTTCTCCTTCAGTGAGATCAACGAGGCAACTAATGAGTTCGATCCGGCTTGGAAGATTCGAGAAGGAAGATACGGAACTACATATAAAG GCCTTCTTCGCCATGTTCATGTAGCCATCAAGATGTTGCCTTCTTATGGCTCTCAGCAAGAATTCCAAAATCGGGTGAAGATTCTGTGTAAGGTGAGGCA TCCAAACCTTGTGACCTTGATTGGAACTTGCTTGGAAGGTAGATCATTTGTCCTCGAGTACGCTAGAAATGGAAGCTTGGAAGATCGCATTGCCTGTAAA GCCAAATCACTGCCGCTAACTTGGCAAACCCGGTTCCGGATGGCTGCTGAGATATGCTCTGCTCTCATCTTCCTCCACTGCAACGATCCCTGCATCATCC ATGGAAACCTAAAACCATCTACAGTCCTCCTCGGCACGAACTTGGTCTGCAAGCTGAGTGATTTCGGCATGCATCTTTTAGTGAAAGAGAAGTCAAACCC CAATTGTGTATCCAACTACGTCGATCCAGAATACTTGGAGACTGGTAATCTCACTCCAGAGTCAGATGTTTATTCATTCGGCATCATCCTTCTATTCCTC CTCACTGCTAGACCAGTGGGGGCAGTAGTGAAAGATGTGAAATGTGCATTAGATAAAGAGAAGCTGGAAACCGTTTTGGATCAGAATGCCGGAGAGTGGC CAGTTGAGCTGGCCAAACCGTTGGCTGACTTGGGATTGAGGTGCTCCAATGGGAACAAGGCGAATCGTCCTAAAATCTCGTCGGTATTAGCTGAGGTGCA GAGAATTTCTGAATTCGCAGCTGCGACTAATTCAGCAGCATCAGGCTTGGATGCCAAGGATTCTCGCCGAGCTCCGGCCCATTTCGTCTGCCCCATTTTC CAGGAAGTGATGCAAGACCCGCAGATAGCAGCGGACGGATTCACCTACGAAGGAGACGCCATTAAGGGATGGTTGAAGAGTGGACACAACACTTCACCTA TGACGAATCTGAAAATGGAACACTGTAACTTGCTCCCTAACCATGCTCTCTACCAGGCTATTCAAGAATGGCACCAGCAACAATGGTAA
AA sequence Show only first row Show all	>Lus10027490 pacid=23144487 polypeptide=Lus10027490 locus=Lus10027490.g ID=Lus10027490.BGIv1.0 annot-version=v1.0 MGSVESETEDTIYVAVGRNSDESKSTLLWTVRNFPGKKICLLHVHQPPASLAVRFSDRQLAVVNKAVKHGDNGSDELERIKIDEVLNQYFLILAQEGVEP DKVWIEARSIEEGIVEIVDRCYVKWLVMGAAADKYYSNREGRNEIFDADNDLPLLLTYSDSVSESPESLKPESLSGFDMSPDAVDNADGIEGLLRNFDGN CSLDFHQPLEMTLPLLEYEAEEIRDQIEEASTSSLEETVMDTCDLKKLAFEEVVKRWKEEENAMEAKCKAKSFSRSNFNCVQKQAKALESLCIKEISLRK EMEETLAREKNAIERTRNQHDKFLQELQLVKEQNATLEKQFGEANSVVQELEEKIMSAVELLISFRKKRDDSRVECENARREVRRLQELGKVDTTRLFRS EILDFSFSEINEATNEFDPAWKIREGRYGTTYKGLLRHVHVAIKMLPSYGSQQEFQNRVKILCKVRHPNLVTLIGTCLEGRSFVLEYARNGSLEDRIACK AKSLPLTWQTRFRMAAEICSALIFLHCNDPCIIHGNLKPSTVLLGTNLVCKLSDFGMHLLVKEKSNPNCVSNYVDPEYLETGNLTPESDVYSFGIILLFL LTARPVGAVVKDVKCALDKEKLETVLDQNAGEWPVELAKPLADLGLRCSNGNKANRPKISSVLAEVQRISEFAAATNSAASGLDAKDSRRAPAHFVCPIF QEVMQDPQIAADGFTYEGDAIKGWLKSGHNTSPMTNLKMEHCNLLPNHALYQAIQEWHQQQW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49060			U-box domain-containing protei...		Lus10027490 [exp]	0	1
AT3G09470			Major facilitator superfamily ...		Lus10023760 [exp]	1.7	0.7080
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10018735 [exp]	8.6	0.6945
AT5G65290			LMBR1-like membrane protein (....		Lus10035927 [exp]	8.9	0.6770
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10026275 [exp]	10.2	0.6844
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Lus10019337 [exp]	15.6	0.6933
AT2G19710			Regulator of Vps4 activity in ...		Lus10040542 [exp]	18.5	0.6395
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10002604 [exp]	25.0	0.6535
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10036562 [exp]	28.9	0.5758
AT2G17760			Eukaryotic aspartyl protease f...		Lus10041865 [exp]	29.2	0.6626
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10036064 [exp]	35.2	0.6749

Compare expression of checked genes

Lus10027490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.