Plant FIBer expression Database

Lus10027491 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G25610 396 / 2e-130 C2H2ZnF C2H2-like zinc finger protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039246
[exp]
1137 / 0 AT4G25610 425 / 4e-141 C2H2-like zinc finger protein (.1.2)
Lus10014974
[exp]
630 / 0 AT4G25610 426 / 6e-143 C2H2-like zinc finger protein (.1.2)
Lus10038856
[exp]
613 / 0 AT4G25610 392 / 4e-130 C2H2-like zinc finger protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G146300
[exp]
556 / 0 AT4G25610 386 / 6e-126 C2H2-like zinc finger protein (.1.2)
Potri.012G143200
[exp]
540 / 0 AT4G25610 400 / 2e-131 C2H2-like zinc finger protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10027491 pacid=23144556 polypeptide=Lus10027491 locus=Lus10027491.g ID=Lus10027491.BGIv1.0 annot-version=v1.0
ATGCCAGTTGCGAAACTCAAAGCGGGCAACACTACGGATGTCATGAAATCAGAAGAGGGGAATGATTCCCTTGACACGTTTATCAGGCAAGCAATGGGAA
AGGAGCCTCTACTTTCCTTCCCAAGGACTAATGATAACCCAGTACAATGGATCCAGCTGCTTCAAGCTCTAGACCAGCAGCAAGATGGACCAGGGTGGCC
TTTACTCACTCCTCTAAAGGTTCAGATGCAAAAATGTGACAAATGTTCTCGAGAGTTTTGTTCCTCTATCAACTATAGAAGGCACACACGGGTCCACCAC
AGACTGAAAAAGCTTGACAAGGATACTACTAAAAACAGGCATCTACTTGGAGCCTTCTGGGAGAAGCTCTCTGAGGATGAGGCGAAGGAGGTATTGTCAT
TCAAGGATGTGGCTTTGGAGGAATTGTCTGGATCTTCAATTGTAAAGTCGTTGATGGCTCTTAATCGGAAGCAGGGATTTTCTCCTCTTCCACTCCACTG
TTTGAGGGCTGGCATCACTCTTTCGGATATCATCCAAGGAAGATTTAGGTATCCTTTATCGTCGGAGGAATTATTTAGCATCCTTGATGATGCCAGTGAA
AAAACATTCCTATGTGGAGCAGCCATCTTAATGCAAAAGTATATTTTTGATGGGGAAGCCAGCAAAACTGGTCTTGAAACGAAAAACGTAGTTGCCTGCA
CCAGCTTCCTGGTGGAACAGAAATTGGTTAAGGCATGGCTTGCTGACAAGGATGCTGAAGCCTTGAGGTGTCAGAAGTTACTTGTGGAGGAGGAAGAAGC
TGCTCAAAGAAGGCAAGCTGAAATCTTGGAGCGGAAAAGGCAGAAGAAATTGCGCCAAAAAGAACAAAGAGCTAAGGAGCAACAGCAAGAAGAGAAGGCT
GATATTGAGGAGACCAATGATGCTACCTCGGAAGCCCCATCTGAGCCACCCTGCTCGACAGCATGTAGTAATGATTTGCATGATGTGGAGATGCTGCAAT
ATGCTTGTTCCTCGTCTTCAGAGCCATTAGAGCTTGCAGATCAAGATGGAGAGTTGGATTTGGAGAGTCAGATCAGATATAGGGTTGATGCTGCTGATCA
AGGGAGAGATCAAATTGTTGAAAGGCAGACAGTCCAGGGAAATAACCGTAGGCATGTAGCTCGGCGGCACATCTCCCAAAAATCACAATGGAATCAGGTG
CCTAATGGTTTTCATGCCTCGGGCAACAAGTATAATGGTACCCAGCTGCATGGAACTTACAGGGATTCAAGACCAGCGGCGATGGTTAATGGGAACAGAA
AGTGGACCAGAAAACCCAGAATGGACAATGGTGGGGAGACTTCAAAACCCAGGTTAGAAAGGGAGGTAACCGTAAGCCAGCAAGATCACGCTAATAAACG
TCAGGTTCTGATTGGATCTATTTCTGTTGCTATTGAAAGTTCCGGTCAGCAGAATAGTAACCAGATCAACCCACAAGTTCCTAAGAAGAGCAACGTTCAG
GACAAATACTCAAGGGCGGATCGGCCTCCGGTGAAGCAATGGAGACCCGTTAGCCGTAACGGATCCGAAGTACAACCGCAACATGATGAAAATGGCGTTA
GAGAATCACATGTTAATGATGTCAGTCTAAGATTGTCCCCGGGACGAGAGTTGGCCAATGGTTCTCTCCTGGAACATGGTCATCTGCACCCTGAAAGATT
CCAGTTCTCAAGCCAAGCAGCAAAAGCTTTGCTTGCTGAAAGGTGGAAGCAAGCCATGGCAACCGAACATGTGAAATTGGTTCTGGCACCGATCCTTGAA
CCATCAAAAGCTGGCACAGGTGGTGTTCAGAAAAATGGATATGTAGGAGGTGGAGTGATGGTTGATGCTAAAGCATCGGAGGGAACGTCTGTTGATGTCA
GTTATGGTGGTGTCAAGGCCGGTAAGTTTAGAGGAAGACCGGAGAAAGGTGTGAAGCTAAAGTACATACCGAAACAAAGAACGTTGAGCTAG
AA sequence
>Lus10027491 pacid=23144556 polypeptide=Lus10027491 locus=Lus10027491.g ID=Lus10027491.BGIv1.0 annot-version=v1.0
MPVAKLKAGNTTDVMKSEEGNDSLDTFIRQAMGKEPLLSFPRTNDNPVQWIQLLQALDQQQDGPGWPLLTPLKVQMQKCDKCSREFCSSINYRRHTRVHH
RLKKLDKDTTKNRHLLGAFWEKLSEDEAKEVLSFKDVALEELSGSSIVKSLMALNRKQGFSPLPLHCLRAGITLSDIIQGRFRYPLSSEELFSILDDASE
KTFLCGAAILMQKYIFDGEASKTGLETKNVVACTSFLVEQKLVKAWLADKDAEALRCQKLLVEEEEAAQRRQAEILERKRQKKLRQKEQRAKEQQQEEKA
DIEETNDATSEAPSEPPCSTACSNDLHDVEMLQYACSSSSEPLELADQDGELDLESQIRYRVDAADQGRDQIVERQTVQGNNRRHVARRHISQKSQWNQV
PNGFHASGNKYNGTQLHGTYRDSRPAAMVNGNRKWTRKPRMDNGGETSKPRLEREVTVSQQDHANKRQVLIGSISVAIESSGQQNSNQINPQVPKKSNVQ
DKYSRADRPPVKQWRPVSRNGSEVQPQHDENGVRESHVNDVSLRLSPGRELANGSLLEHGHLHPERFQFSSQAAKALLAERWKQAMATEHVKLVLAPILE
PSKAGTGGVQKNGYVGGGVMVDAKASEGTSVDVSYGGVKAGKFRGRPEKGVKLKYIPKQRTLS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G25610 C2H2ZnF C2H2-like zinc finger protein ... Lus10027491
[exp]
0 1
AT5G54920 unknown protein Lus10016477
[exp]
1.0 0.9150
AT2G42520 P-loop containing nucleoside t... Lus10029337
[exp]
4.9 0.9112
AT1G59610 DRP2B, CF1, ADL... Dynamin related protein 2B, dy... Lus10007887
[exp]
4.9 0.9043
AT1G61850 phospholipases;galactolipases ... Lus10007661
[exp]
8.7 0.8805
AT1G30450 HAP5, ATCCC1, C... HAPLESS 5, cation-chloride co-... Lus10036156
[exp]
8.8 0.8929
AT4G32640 Sec23/Sec24 protein transport ... Lus10004122
[exp]
13.4 0.8934
AT5G24710 Transducin/WD40 repeat-like su... Lus10028093
[exp]
13.4 0.8767
AT4G35260 IDH-I, IDH1 isocitrate dehydrogenase I, is... Lus10028374
[exp]
15.6 0.8689
AT5G63840 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN... Lus10020887
[exp]
16.5 0.9006
AT4G11740 SAY1 Ubiquitin-like superfamily pro... Lus10006321
[exp]
17.8 0.8458

Lus10027491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.