Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52420 124 / 6e-35 unknown protein AT5G23920 105 / 4e-28 unknown protein AT1G27990 71 / 1e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039249 [exp] 312 / 2e-109 AT5G52420 160 / 2e-49 unknown protein Lus10039248 [exp] 115 / 1e-31 AT5G52420 212 / 8e-69 unknown protein Lus10015763 [exp] 64 / 4e-12 AT1G27990 302 / 5e-104 unknown protein Lus10037043 [exp] 63 / 6e-12 AT1G27990 306 / 2e-105 unknown protein Lus10027493 [exp] 41 / 6e-05 AT5G52420 52 / 4e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G146400 [exp] 137 / 5e-40 AT5G52420 259 / 3e-87 unknown protein Potri.012G143300 [exp] 70 / 6e-15 AT5G52420 126 / 3e-36 unknown protein Potri.001G059500 [exp] 69 / 4e-14 AT1G27990 308 / 7e-106 unknown protein Potri.003G168400 [exp] 70 / 5e-14 AT1G27990 318 / 5e-109 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027495 pacid=23144616 polypeptide=Lus10027495 locus=Lus10027495.g ID=Lus10027495.BGIv1.0 annot-version=v1.0 ATGGCGGACGACAACGTTCCTCGAGCAAAATCAATCCTCCTAAACCCAATCCAAATCTTCTGCCTCCTCACTTCAATCCTCCTCGTCGCCACCTCCTCCG TAACCCTACACCACCCGCTCTTCGTCATCTTCTCCGCCGCCTACGTCTACTTCCTCTCCAAATTCTCCTTCCCACGCAACTCCACTCCCAACGACTCCGT CTTCTCCCGCAGCAACAAGCTCCTCTCCAATTACGTCCTCGTAGGCGGCGTCGTCGGCCTCTTCCTCCCCGCCGCCTACATCCTCCTCAGCGGAGAAGCC GTCAGATTCGCGGCGGCGCCGCATCTGTTTCTGCTGGCGAGCCAGGTGTTCATGGAAGGAGTGTCGTTTGCGGCTGGGGTTTCGATTCCCGTTCGAGCCT TTGTTCCCGTTTTCTACAATTCGAGGAGGATTTTCAGTATTGTGGAGTGGATTGAGTTCGAGTTTGGGGAGTCCGGCGGCGGCGGTGGGGTTTTGGGGAA GGTGTTGGCGGTGGCGAATTTGGGGTTTTGGGGGTATAATTTGTTTGGGTTTTTGTTGCCTGTTTATCTTCCTAGAGTTTTCAGGAGGTATTACGGTGCT TCTTCTGCTGCTCAGTGA
AA sequence Show only first row Show all	>Lus10027495 pacid=23144616 polypeptide=Lus10027495 locus=Lus10027495.g ID=Lus10027495.BGIv1.0 annot-version=v1.0 MADDNVPRAKSILLNPIQIFCLLTSILLVATSSVTLHHPLFVIFSAAYVYFLSKFSFPRNSTPNDSVFSRSNKLLSNYVLVGGVVGLFLPAAYILLSGEA VRFAAAPHLFLLASQVFMEGVSFAAGVSIPVRAFVPVFYNSRRIFSIVEWIEFEFGESGGGGGVLGKVLAVANLGFWGYNLFGFLLPVYLPRVFRRYYGA SSAAQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52420			unknown protein		Lus10027495 [exp]	0	1
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10012452 [exp]	2.0	0.9719
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10020508 [exp]	2.4	0.9685
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10006188 [exp]	3.5	0.9640
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10002078 [exp]	5.3	0.9557
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	8.4	0.9438
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10009352 [exp]	8.8	0.9348
AT1G05140			Peptidase M50 family protein (...		Lus10027190 [exp]	8.9	0.9313
AT2G33855			unknown protein		Lus10013983 [exp]	9.9	0.9275
AT4G38225			unknown protein		Lus10013843 [exp]	12.4	0.9180
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10028299 [exp]	12.4	0.9314

Compare expression of checked genes

Lus10027495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.