Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02260 713 / 0 Divalent ion symporter (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039251 [exp] 914 / 0 AT1G02260 719 / 0.0 Divalent ion symporter (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G146900 [exp] 729 / 0 AT1G02260 647 / 0.0 Divalent ion symporter (.1) Potri.012G144000 [exp] 650 / 0 AT1G02260 582 / 0.0 Divalent ion symporter (.1) Potri.017G141600 [exp] 634 / 0 AT1G02260 569 / 0.0 Divalent ion symporter (.1) Potri.017G141800 [exp] 591 / 0 AT1G02260 538 / 0.0 Divalent ion symporter (.1) Potri.017G141950 [exp] 296 / 3e-98 AT1G02260 263 / 2e-85 Divalent ion symporter (.1) Potri.017G141700 [exp] 143 / 2e-41 AT1G02260 140 / 7e-41 Divalent ion symporter (.1) Potri.017G141650 [exp] 89 / 5e-22 AT1G02260 64 / 5e-14 Divalent ion symporter (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [flax] [poplar] IT PF03600 [flax] [poplar] CitMHS Citrate transporter
Representative CDS sequence Show only first row Show all	>Lus10027497 pacid=23144462 polypeptide=Lus10027497 locus=Lus10027497.g ID=Lus10027497.BGIv1.0 annot-version=v1.0 ATGGCGATGGCATCTTCAGCCAAAGTGGCACTAGGCTCAGTCGCCTTTGCAATCTTCTGGGTACTAGCAGTATTTCCAGCGGTCCCCTTTCTACCAATTG GAAGAACAGCAGGTTCCTTATTGGGAGCTATGCTAATGGTGATATTCCAGGTAATAACCCCTGACCAAGCCTATTCAGCAATTGATCTCCCCATCTTAGG TCTCCTCTTCGGAACCATGGTGGTCAGTGTCTATCTGGAAAGAGCAGACATGTTCAAATACTTGGGAAAGTTGCTATCTTGGAAGCGCTTAGGGCCTAAA GATTTGCTTTTTAGGGTTTGTTTGGTATCAGCTGTTTCAAGTGCATTCTTCACTAATGATACCTCTTGTGTTGTTCTGACTGAGTTTGTTCTCAAAGTTG CTAGGCAGCATAATCTGCCACCTCACCCCTTTTTGCTGGCGTTGGCTTCCAGTGCAAACATTGGATCTTCAGCTACACCGATTGGGAATCCTCAGAATTT GGTTATAGCTGTTCAGAGTGGGATTTCATTTGGGGGGTTTTTGTTAGGGATTGTTCCTGCTATGGTTGTTGGTGTTTTAGTGAATGCTGTGATTCTCATG TGTATGTATTGGAAGCTTCTTTCTTCTGTTCCTAAAGATGTGGAAGAAAATGGTGGTGAGGTTGTTTTAGATCATGAGGATGTCAATTCGCATCGATTCT CGCCTGCTACGATGTCTCATCAAAGCTCGAACTCTAGGGAAGAATCACCAAGTGTGAATGGTGGTGTGGAGATCACCACCTTGAGGAATAGGGTGGTGTC TACTACTAATTCGGCAGAAGATGGCTCGAATGCATCGGATGTGGATGCATCATCATCGTTGGATGCATTCGATGGCGAGGATGATCCTTGCGAGAGCAAG TGGAAAAGGGTGGTGTGGAAGTCATGTGTTTACCTGATTACCATAGGGATGTTGGTGGCTTTGCTTACGGGTTTGAACATGTCATGGTCTGCAATCACTG CTGCACTTGCTCTTGTGGTTCTTGATTTTAAGGATGCCCGCCCCAGCCTCGAGAAGGTGTCGTATTCCCTCCTCATATTCTTCTGTGGAATGTTCATCAC AGTCGATGGCTTCAACAAAACCGGAATCCCAAGCACCCTTTGGGATTTGATGGAACCTTACGCCAAAATAGACCATCCAACTGGGATATTAGTCCTAGCC CTGGTCATACTTTGTCTCTCTAACTTGGCCTCCAACGTCCCAACCGTGCTACTGCTGGGAGCGAGAGTGGCAGCATCTGCGGCCGAGTTATCAAAAGAGG ACGAGAAGAAGGCGTGGCTGATACTGGCGTGGGTGAGCACCGTGGCTGGGAACTTGTCACTGTTGGGTTCTGCTGCGAACTTGATAGTGTGTGAACAAGC CAGGCGTGCTCCACAGTTTGGATACGACCTGTCGTTTTGGAAGCACCTCAAGTTTGGTGTCCCTTCTACTCTTATAGTTACTGCTATTGGTCTGACACTC ATTAGATAA
AA sequence Show only first row Show all	>Lus10027497 pacid=23144462 polypeptide=Lus10027497 locus=Lus10027497.g ID=Lus10027497.BGIv1.0 annot-version=v1.0 MAMASSAKVALGSVAFAIFWVLAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYSAIDLPILGLLFGTMVVSVYLERADMFKYLGKLLSWKRLGPK DLLFRVCLVSAVSSAFFTNDTSCVVLTEFVLKVARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSGISFGGFLLGIVPAMVVGVLVNAVILM CMYWKLLSSVPKDVEENGGEVVLDHEDVNSHRFSPATMSHQSSNSREESPSVNGGVEITTLRNRVVSTTNSAEDGSNASDVDASSSLDAFDGEDDPCESK WKRVVWKSCVYLITIGMLVALLTGLNMSWSAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSTLWDLMEPYAKIDHPTGILVLA LVILCLSNLASNVPTVLLLGARVAASAAELSKEDEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRAPQFGYDLSFWKHLKFGVPSTLIVTAIGLTL IR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02260			Divalent ion symporter (.1)		Lus10027497 [exp]	0	1
AT2G24370			Protein kinase protein with ad...		Lus10040573 [exp]	3.9	0.9335
AT5G49960			unknown protein		Lus10013455 [exp]	5.8	0.9296
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10000490 [exp]	7.4	0.9145
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10020835 [exp]	7.7	0.9143
AT4G28390		ATAAC3, AAC3	ADP/ATP carrier 3 (.1)		Lus10018611 [exp]	7.9	0.9080
AT5G65530			Protein kinase superfamily pro...		Lus10025713 [exp]	9.5	0.9146
AT1G71740			unknown protein		Lus10029742 [exp]	9.5	0.9199
AT3G11150			2-oxoglutarate (2OG) and Fe(II...		Lus10007495 [exp]	14.8	0.8907
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024078 [exp]	15.9	0.9281
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10039599 [exp]	18.0	0.9233

Compare expression of checked genes

Lus10027497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.