Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52430 301 / 2e-95 hydroxyproline-rich glycoprotein family protein (.1) AT4G25620 276 / 2e-85 hydroxyproline-rich glycoprotein family protein (.1) AT1G63720 150 / 4e-40 unknown protein AT1G76660 132 / 3e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039253 [exp] 682 / 0 AT5G52430 374 / 6e-125 hydroxyproline-rich glycoprotein family protein (.1) Lus10032276 [exp] 206 / 4e-59 AT5G52430 265 / 8e-84 hydroxyproline-rich glycoprotein family protein (.1) Lus10024642 [exp] 206 / 7e-59 AT5G52430 261 / 2e-82 hydroxyproline-rich glycoprotein family protein (.1) Lus10028779 [exp] 169 / 4e-44 AT5G52430 191 / 6e-54 hydroxyproline-rich glycoprotein family protein (.1) Lus10017503 [exp] 164 / 2e-42 AT5G52430 183 / 5e-51 hydroxyproline-rich glycoprotein family protein (.1) Lus10016050 [exp] 121 / 3e-29 AT1G76660 438 / 5e-152 unknown protein Lus10025171 [exp] 117 / 3e-27 AT1G76660 420 / 1e-141 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144200 [exp] 454 / 3e-153 AT4G25620 382 / 2e-128 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G102200 [exp] 231 / 2e-68 AT5G52430 232 / 2e-71 hydroxyproline-rich glycoprotein family protein (.1) Potri.003G129400 [exp] 218 / 8e-64 AT5G52430 193 / 1e-56 hydroxyproline-rich glycoprotein family protein (.1) Potri.002G001100 [exp] 144 / 9e-37 AT1G76660 487 / 1e-170 unknown protein Potri.005G260000 [exp] 136 / 4e-34 AT1G76660 453 / 7e-158 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027498 pacid=23144570 polypeptide=Lus10027498 locus=Lus10027498.g ID=Lus10027498.BGIv1.0 annot-version=v1.0 ATGGCCGCAGCTCATCTTCTCTCTGATTCCCAGTCCGAGATGAGAAGCGTCACTATGACCACCAACGTCACCGTCGATACTGTTAACGCTGCCGCCACCG CCATCGTCTCCGCCGAGTCACGTGTACAGCCTGCTGCCGTCCCGAAGAGAAGATGGGGAGGCTGGTGGGGTATGTACTGGTGCTTTGGTGCTCATAAAAG CGACAAACGAATTGGTCATGCTGTGCTTGTACCTGAACCAGAATCAGAGAGAGTAGCACCTTCTTCCTCTGTCACTCAGTCCCACTCAACTGCTGTTGTG CTTCCCTTCATTGCTCCTCCTTCCTCTCCAGCTTCGTTCCTTCAATCAGATCCTTCATCTGTCACTCAGTCACCAGCAGGAAAATTGTCTCTGAATTCTC TCTCTGCCAATGCCTATTCACCTCGGGGACCTCCCTCCATGTTTGCTATAGGGCCCTATGCACACGAGACCCAGCTAGTGACACCGCCTGTGTTTTCCGC CTTCACCACTGAGCCATCCACTGCTCCTTTTACTCCTCCGCCGGAATCTGTTCAACTCACTACACCTTCGTCTCCCGAGGTGCCATTTGCTCAGCTTCTG ACATCGTCTCTTGAACGTGCTCGGAGAAATAGCGGGCCCACTCCCAAATACGGATTCTCAAACTACGAATTCCCTCATGTATACCCAGGTAGCCCCGGTG CTCAACTCATCTCTCCGGGGTCAACTGTTTCATATTCAGGGACCTCTTCCCCTTTTCCTGATAGACTCCCGGTTCTTGGGTTCCCTACAGGGGAAGCTCC GAAGCACATTGGCTATGAGCATTTCAATACTCGCAAGTGGGGTTCGAGATTGGGTTCTGGATCTCTGACCCCAGATGGCGTAGGTCGAGGTTCAAGGCTA GCTTCAGGAACAACAACTCCGGATGGCATGGGTCTGGGTTCAAGGCTAGCTTCAGGAACAACAACTCCGGATGGCATTGGTCTAGGTTCAAGGCTAGCTT CAGGAACAACAACTCCGGATGGCATTGGTCTAGGTTCAAGGCTAGCTTCAGGAACAACAACTCCGGATGGCATTGGTCTAGGTTCAAGGCTAGCTTCAGG AACAACAACTCCGGATGGCATTGGTCTAGGTTCAAGGCTAGCTTCAGGAACAACAACTCCGGATGGCATTGGTCTAGGTTCAAGGCTAGCTTCAGGAACA ACAACTCCGGATGGCATTGGTCTAGGTTCAAGGCTAGCTTCAGGAACAACAACTCCGGATGGCATTGGTCTAGGTTCAAGGCTAGCTTCAGGAACAACAA CTCCGGATGGCATTGGTCTAGGTTCAAGGCTAGCTTCAGGAACAACAACTCCGGATGGCATTGGTCTAGGTTCAAGGCTAGCTTCAGGAACAACAACTCC AGATTGTGTAGGTCTGGGTTCCAGATTAGCTTCAGGAACTATGACTCCAGATGGTATAGGGTTGGGTTCGAGGCTGGGTTCAGGAAGTGCTACGCCAGAC GGGGGAAGTATATATTCTAGGATGGGCTCAGGAGCTTTGACACCTGGCATTCAGGAAGGTGTCCTATTAATGAACCCAGTCTTAGAAGCTGCACATCTTC CCCTCTTGCAAAATGGAGCCGCCAAAACTCATGAAGCCGTGGTTGATCACAGAGTTTCGTTCGAGTTGAGCGGCGAAGATGTTGCACGCTGCCTCGAAAA TAAGTCGCTGGCCTCGAACAGAACTTTCCTAGAATCGGGGGATGATCATGGAGAAAGCGGTGAGAGCCTGATGAGGTCTGAAGTCCGTTTGCGTGTCGGC GAAACTTCTTCAAACGAATCACCCGGCAAACCAACATCGGGAGAAGTAGCAGAAGACGAGCCTTCCTTCAGAAGACAACGATCTGTCACTCTTGGATCGA TAAAAGAGTTCAACTTCGACAGCTCGAAGGGAGAAAGCATAGATAAATCGGAATGGTGGGCAAACGAAGCAATCGCTGGCAAGGAATCGAAACCTACAAA CGGGTGGAGCTTCTTTCCGATCCTACAGCCGGAGGTCAGTTGA
AA sequence Show only first row Show all	>Lus10027498 pacid=23144570 polypeptide=Lus10027498 locus=Lus10027498.g ID=Lus10027498.BGIv1.0 annot-version=v1.0 MAAAHLLSDSQSEMRSVTMTTNVTVDTVNAAATAIVSAESRVQPAAVPKRRWGGWWGMYWCFGAHKSDKRIGHAVLVPEPESERVAPSSSVTQSHSTAVV LPFIAPPSSPASFLQSDPSSVTQSPAGKLSLNSLSANAYSPRGPPSMFAIGPYAHETQLVTPPVFSAFTTEPSTAPFTPPPESVQLTTPSSPEVPFAQLL TSSLERARRNSGPTPKYGFSNYEFPHVYPGSPGAQLISPGSTVSYSGTSSPFPDRLPVLGFPTGEAPKHIGYEHFNTRKWGSRLGSGSLTPDGVGRGSRL ASGTTTPDGMGLGSRLASGTTTPDGIGLGSRLASGTTTPDGIGLGSRLASGTTTPDGIGLGSRLASGTTTPDGIGLGSRLASGTTTPDGIGLGSRLASGT TTPDGIGLGSRLASGTTTPDGIGLGSRLASGTTTPDGIGLGSRLASGTTTPDGIGLGSRLASGTTTPDCVGLGSRLASGTMTPDGIGLGSRLGSGSATPD GGSIYSRMGSGALTPGIQEGVLLMNPVLEAAHLPLLQNGAAKTHEAVVDHRVSFELSGEDVARCLENKSLASNRTFLESGDDHGESGESLMRSEVRLRVG ETSSNESPGKPTSGEVAEDEPSFRRQRSVTLGSIKEFNFDSSKGESIDKSEWWANEAIAGKESKPTNGWSFFPILQPEVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52430			hydroxyproline-rich glycoprote...		Lus10027498 [exp]	0	1
AT1G71900			Protein of unknown function (D...		Lus10015480 [exp]	2.2	0.8163
AT2G27090			Protein of unknown function (D...		Lus10026763 [exp]	6.0	0.8055
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10010071 [exp]	8.3	0.8024
AT3G62220			Protein kinase superfamily pro...		Lus10004524 [exp]	14.8	0.7683
AT1G59650		CW14	Protein of unknown function (D...		Lus10039463 [exp]	19.3	0.7825
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10011814 [exp]	27.3	0.7711
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10013781 [exp]	28.6	0.7344
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10020551 [exp]	29.7	0.7166
AT4G31340			myosin heavy chain-related (.1...		Lus10036424 [exp]	29.9	0.7655
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10030357 [exp]	32.4	0.7873

Compare expression of checked genes

Lus10027498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.