Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14147 256 / 9e-82 ARPC4 protein binding (.1.2) AT4G23160 236 / 4e-66 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT5G52440 155 / 7e-43 HCF106 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1) AT5G28750 55 / 1e-08 Bacterial sec-independent translocation protein mttA/Hcf106 (.1) ATMG00820 0 / 1 ATMG00820.1, ORF170 Reverse transcriptase (RNA-dependent DNA polymerase) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039254 [exp] 333 / 4e-110 AT5G52440 174 / 5e-53 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Lus10038118 [exp] 211 / 4e-58 AT5G33280 1140 / 0.0 Voltage-gated chloride channel family protein (.1) Lus10021849 [exp] 149 / 2e-38 AT4G23160 138 / 1e-34 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10006588 [exp] 59 / 5e-10 AT5G28750 130 / 3e-39 Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Lus10015910 [exp] 54 / 8e-08 AT5G28750 103 / 2e-28 Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057400 [exp] 256 / 8e-82 AT4G14147 318 / 4e-113 protein binding (.1.2) Potri.012G144300 [exp] 179 / 2e-51 AT5G52440 216 / 5e-70 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Potri.015G147100 [exp] 172 / 3e-49 AT5G52440 209 / 2e-67 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Potri.012G007800 [exp] 153 / 2e-38 AT2G25440 227 / 1e-62 receptor like protein 20 (.1) Potri.013G040900 [exp] 62 / 7e-11 AT5G28750 97 / 5e-26 Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Potri.005G053400 [exp] 61 / 1e-10 AT5G28750 117 / 3e-34 Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Potri.007G090150 [exp] 40 / 0.0005 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05856 [flax] [poplar] ARPC4 ARP2/3 complex 20 kDa subunit (ARPC4) PF02416 [flax] [poplar] TatA_B_E mttA/Hcf106 family CL0027 [flax] [poplar] RdRP PF07727 [flax] [poplar] RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase)
Representative CDS sequence Show only first row Show all	>Lus10027499 pacid=23144572 polypeptide=Lus10027499 locus=Lus10027499.g ID=Lus10027499.BGIv1.0 annot-version=v1.0 ATGGCTATGGCGACTCTCATTACCACCCCATCTACTACGACTTCAACTAGAGCAAGATTGCTTCTCCATCCTCAAAGGCCGCCATGCTCGGCTCCGAATT ACTGCCCCAGCTTTGGCCTCTCCAGTTCGATTCCCCAACAGTGTTCATCGACTCTCTCTCAACGGAATGGGTTGAAGCTGCTAGGCATCCCAATCGCCAC CAAGTTTCTGCATCATAGAGGAAGGAAAGGGAAGCGTAAGGGTAAGTTTGACGCTCGTGCTTCCTTGTTTGGAGTTGGAGCTCCTGAAGCTTTGGTGATT GGAGTTGTGGCCTTATTGGTGTTTGGCCCCAAAGGTCTTGCCGAGGTAGCACGCAATTTAGGCAAGACTTTGCGAGCATTTCAGCCCACCATTAGAGAAC TCCAGGACGTTTCGAGGGAGTTCAAAAGCACCCTTGAGAAGGAGATTGGTCTCGATGACATTACGAATTCTACATCTCAAACAACAAATCTCTCCAACAC AACACCTACTACCACTCCTGCCCCACCCTCCCCGCCAGTTACGAGCTCTACAGATTCTCCAGCTGAATCTGAACCCAATGGTACTCCTACTGCGGGCAAG GCATATACAAGTGAGGAGTACTTGAAAATCACGGAAGAGCAGCTGAAGAAGGCATCCGCTAGCCAACAACAAGCCGAAGTACCGGCAGCAGTCGAGAGCC AGCCAGAAGCTAAAGCCACAGAAGAGAATGGCGAGCAACAACAGGAGCAGACACTTGTTGCAGCAGAGAGCCAAGTTGCACCACCTCAAGCTCAACCAAC AGAAAGGGAACCTAGGTCCTATGCAGAAGCTGCCAGAGACCCTAGGTGGACTGAAGCAATGAATCAGGAAACAAAGGCTTTGGAGATTAACAACACATGG GAAGTTGTTGATCTGCCTGAAGGAAAGAAAGAAGTTGGAAGCAAATGGGTTTACAGAATTAAGTATAAATCTGATGGCTCAGTTGAAAGGTTCAAAGCAA GAGCAGTAGCAAAGGGGTTCACACAAGAAGAAGGGGTCGACTATCAAGAAACTTTCTCACCAGTCGTCAAAATGACAACCATAAGGACCTTTCTTGCACT TGCTGCTTCAAGAGACTGGTTTGTACACCAGTTAGACGTGAACAACGCATTTCTTCATGGTGACCTGCATGAAGAAGTCTACATGAAGGTGCCTCAAGGA ATGAGAGTAAGCAGTGCACTGAAAAGACCAGTATGCAAATTGCTAAAATCGCTCTATGGTCTCAAGCAAGCATCAAGGCAGTGGTACTGCAAGCTTTCAG ACAAACTACAACAGTTAGGCTACACTCAAAGCAAAGTCGATCACTCTCTCTTCCTGAAGAATGGTGGTATGTCGTTCACAGCTATTTTGGTTTATGTTGA TGATTTGATTGTGGGAGGAAACGACTTAACAGAGATTTTGAAGTTGAAAGAGGAACTAAACTTCCCTTGTCAAGAAGTTGAGAGGCACAACAAGCCAGAG GTTGAACTAAAGACAAGCTCGGAACTTCTGCTTAATCCTGTGTTGATCTGTCGAAATGAGGCTGAAAGATGCTTGATAGAAACATCTATCAATTCATTGC GACTAAGCCTTAAGGTAAAGCAGGCAGATGAACTTGAAAACATACTGACAAAGAAGTTCCTCCGGTTTTTGTCGATAAGGGCCGAAGCATTTGAAGTGCT TAGGCGAAAACCGATACAAGTGAGCTATGATCTACTTGTACAGATTGACCTGACTGTAGGATTCTGTATAGATAGTATGCTGACTGCAATATATCCCCTC TCTCCTTGTGGTACTTGGCAGGGTTATGATATTAGCTTCCTCATAACAAACTTCAGTTGTGAGAATATGCAGAAGCAAAAGCTAATAGATTTCATCGTGC AATTCATGGAGGATATTGACAAGGAGATAGGCGACCTTAAGATGTCGGTGAACACGAGGGGGAGGCTCGTGGCAGCGGAGTATCTAAAGCAGTTCATTTG A
AA sequence Show only first row Show all	>Lus10027499 pacid=23144572 polypeptide=Lus10027499 locus=Lus10027499.g ID=Lus10027499.BGIv1.0 annot-version=v1.0 MAMATLITTPSTTTSTRARLLLHPQRPPCSAPNYCPSFGLSSSIPQQCSSTLSQRNGLKLLGIPIATKFLHHRGRKGKRKGKFDARASLFGVGAPEALVI GVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEKEIGLDDITNSTSQTTNLSNTTPTTTPAPPSPPVTSSTDSPAESEPNGTPTAGK AYTSEEYLKITEEQLKKASASQQQAEVPAAVESQPEAKATEENGEQQQEQTLVAAESQVAPPQAQPTEREPRSYAEAARDPRWTEAMNQETKALEINNTW EVVDLPEGKKEVGSKWVYRIKYKSDGSVERFKARAVAKGFTQEEGVDYQETFSPVVKMTTIRTFLALAASRDWFVHQLDVNNAFLHGDLHEEVYMKVPQG MRVSSALKRPVCKLLKSLYGLKQASRQWYCKLSDKLQQLGYTQSKVDHSLFLKNGGMSFTAILVYVDDLIVGGNDLTEILKLKEELNFPCQEVERHNKPE VELKTSSELLLNPVLICRNEAERCLIETSINSLRLSLKVKQADELENILTKKFLRFLSIRAEAFEVLRRKPIQVSYDLLVQIDLTVGFCIDSMLTAIYPL SPCGTWQGYDISFLITNFSCENMQKQKLIDFIVQFMEDIDKEIGDLKMSVNTRGRLVAAEYLKQFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14147		ARPC4	protein binding (.1.2)		Lus10027499 [exp]	0	1
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10029398 [exp]	1.0	0.8617
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024318 [exp]	4.6	0.7566
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	6.5	0.8144
AT4G19010			AMP-dependent synthetase and l...		Lus10022542 [exp]	9.5	0.7598
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10041952 [exp]	11.0	0.7732
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10012420 [exp]	13.6	0.7132
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	22.4	0.7533
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10013513 [exp]	24.4	0.7698
AT2G44870			unknown protein		Lus10020395 [exp]	24.5	0.7412
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10022853 [exp]	25.8	0.7297

Compare expression of checked genes

Lus10027499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.