Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23940 557 / 0 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) AT5G01210 224 / 9e-68 HXXXD-type acyl-transferase family protein (.1) AT2G39980 218 / 2e-65 HXXXD-type acyl-transferase family protein (.1) AT5G42830 193 / 2e-56 HXXXD-type acyl-transferase family protein (.1) AT5G67150 184 / 8e-53 HXXXD-type acyl-transferase family protein (.1) AT5G07850 182 / 5e-52 HXXXD-type acyl-transferase family protein (.1) AT3G50270 181 / 5e-52 HXXXD-type acyl-transferase family protein (.1) AT3G50280 180 / 1e-51 HXXXD-type acyl-transferase family protein (.1) AT3G50300 177 / 3e-50 HXXXD-type acyl-transferase family protein (.1) AT5G07860 176 / 4e-50 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039256 [exp] 824 / 0 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10039255 [exp] 288 / 7e-97 AT5G23940 206 / 3e-65 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 196 / 3e-57 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 194 / 2e-56 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 186 / 5e-54 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 169 / 5e-47 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 163 / 7e-45 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 160 / 8e-44 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10021394 [exp] 152 / 5e-41 AT2G19070 466 / 4e-162 spermidine hydroxycinnamoyl transferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G147300 [exp] 601 / 0 AT5G23940 578 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Potri.012G144500 [exp] 595 / 0 AT5G23940 590 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 229 / 8e-70 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 224 / 5e-68 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 206 / 6e-61 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.010G192400 [exp] 206 / 1e-60 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 201 / 3e-59 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 197 / 8e-58 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 196 / 2e-57 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 189 / 1e-54 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10027500 pacid=23144525 polypeptide=Lus10027500 locus=Lus10027500.g ID=Lus10027500.BGIv1.0 annot-version=v1.0 ATGGCCTCCGCCGCCGTCAAAATCACTTCCAAGACCCACGTCAAACCCACCACGAGCATCGGGAGGAAAGAATGCCAGCTCGTCACTTTCGACCTCCCTT ACCTGGCTTTCTACTACAACCAGAAGCTCCTCATCTACAAATCCAACGGCCCCTTTGACTTCGCTGACGTGGCGGGGAAGATCAGGGAGTCGCTGGGTGT GGTCCTGGGGGAGTTCTACCAGCTGGCGGGGAAGCTCGGGAAGGACGAGGAAGGCGTTTTCAGAGTTGAGTATGATGACTCGGACGCTGACGTGGAGGGG GTTCAAGTGCTGGAGGCTGTTGCGGAGGGTGTCTGCGTGGGTGATCTGACGGTGGAGGATGGATCTGGTGGGGCTTTGATTAAGGAGTTGATTCCGTATA ATGGAGTGCTTAATCTCGAAGGCATGCATCGCCCTTTGCTGGCTGTTCAGCTGACTAAGCTAGAAGACGGACTTGCAATGGGCTGCGCGTTCAACCACGC AATTCTGGACGGGACGGCCACGTGGCACTTTATGAGCTCATGGGCCGAGATCTGCAGTGGCAAGTCCACCTCCGTATCGAACCCGCCTTTCCTGGATCGA ACCAAGGCCCGTAACACACGCGTGAAGCTCGACCTCTCACCACCGGCTCCTGCGGCCAAGTCCGAAGAAGAATCCGCCGCGGCCAAACCGGAGGGTTCAC AATTGAGAGAGAAGGTGTTTAAATTCTCCGACTCAGAAGTCGCCACGATCAAGTCACTGGTCAATTCCAATCCGGCGTTGGCGGAGGGCAGGAAGCCTCT GTCCACTTTCCAGACCTTGTCCGTGCACATCTGGCGGCACGTCACCATGGCTAGAGAGCTGAAGCCCGAGGACTACACGGTGTTCACCGTCTTCGCCGAC TGCAGGAAGCGGGTCGACCCGGCGATGGCGGACAGCTACTTCGGAAACCTGATCCAGGCGATATTCACCGTCCTACCGGCCGGAATGCTCATCAGCAACC CGCCGGGGTTCGGGGCGTCGATGATACAGGGAGTTATCGAGAAGCACGACGCGAAGGCAATCGAAGGGAGGAACTCGGACTGGGAGGCGGCGGCGCCGAA GATATTCCAGTTCAAGGACGCCGGAGTGAACTGCGTGGCGGTAGGGAGCTCGCCGAGGTTCAAGGTCTACGACGTGGATTTCGGGTTCGGGAAGCCCGAG AGTGTCCGGAGCGGGTTGAATAACCGGTTCGACGGGATGGTGTATATGTACCAAGGGAAGAACGGAGGGATCGATGTGGAGATTAGCTTGGAGAGTGCGG CGATGGAGAAGCTGGAGAAGGATAAGGAGTTTCTTATGGAGGAAGTTCACTGTAATTTGGCCGCTTGA
AA sequence Show only first row Show all	>Lus10027500 pacid=23144525 polypeptide=Lus10027500 locus=Lus10027500.g ID=Lus10027500.BGIv1.0 annot-version=v1.0 MASAAVKITSKTHVKPTTSIGRKECQLVTFDLPYLAFYYNQKLLIYKSNGPFDFADVAGKIRESLGVVLGEFYQLAGKLGKDEEGVFRVEYDDSDADVEG VQVLEAVAEGVCVGDLTVEDGSGGALIKELIPYNGVLNLEGMHRPLLAVQLTKLEDGLAMGCAFNHAILDGTATWHFMSSWAEICSGKSTSVSNPPFLDR TKARNTRVKLDLSPPAPAAKSEEESAAAKPEGSQLREKVFKFSDSEVATIKSLVNSNPALAEGRKPLSTFQTLSVHIWRHVTMARELKPEDYTVFTVFAD CRKRVDPAMADSYFGNLIQAIFTVLPAGMLISNPPGFGASMIQGVIEKHDAKAIEGRNSDWEAAAPKIFQFKDAGVNCVAVGSSPRFKVYDVDFGFGKPE SVRSGLNNRFDGMVYMYQGKNGGIDVEISLESAAMEKLEKDKEFLMEEVHCNLAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10027500 [exp]	0	1
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10008861 [exp]	3.2	0.8998
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10023100 [exp]	6.8	0.8970
					Lus10005901 [exp]	7.3	0.8749
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10020785 [exp]	7.9	0.8944
					Lus10008409 [exp]	10.8	0.8868
					Lus10024490 [exp]	11.0	0.8570
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017717 [exp]	13.8	0.8208
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10025821 [exp]	14.0	0.8858
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10018527 [exp]	14.4	0.8397
					Lus10030762 [exp]	16.3	0.8708

Compare expression of checked genes

Lus10027500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.