Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49070 98 / 2e-23 Protein of unknown function (DUF677) (.1) AT1G20180 46 / 1e-05 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039258 [exp] 48 / 2e-06 AT3G49070 168 / 1e-50 Protein of unknown function (DUF677) (.1) Lus10017286 [exp] 43 / 0.0001 AT1G20180 265 / 1e-85 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10017348 [exp] 42 / 0.0003 AT1G20180 255 / 4e-81 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G147400 [exp] 159 / 2e-46 AT3G49070 253 / 1e-80 Protein of unknown function (DUF677) (.1) Potri.005G193000 [exp] 61 / 2e-10 AT1G20180 155 / 8e-44 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.005G243800 [exp] 55 / 1e-08 AT1G20180 252 / 2e-80 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.002G018200 [exp] 52 / 8e-08 AT1G20180 288 / 2e-94 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05055 [flax] [poplar] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Lus10027501 pacid=23144625 polypeptide=Lus10027501 locus=Lus10027501.g ID=Lus10027501.BGIv1.0 annot-version=v1.0 ATGTCCCTGAAGGGTTATGAGAACACCGCCACCCGCAACATCATCACTTGGTTGAATAACCGAACCATCAATCCAACTTTAAAAATCTCTCAGTTTGTTC TACAGATCATCGTCCACTATGAAACAAAAACTGAGTTCTCGCTTGACCAACTTCTTTTCAATCTACGCTTTTGGTGTTGCACGGCCTATCAACCGACCGC CGTCCGGGAAGAATACGCCAACGCCTTTAGAACAGAATCCTACCTCGAGTTCTGGACCCGTGTCTTCACGGCCTCCGACGGCGGCGGCTCTGCCACCGGG ATTCCGGCGAATTCCACCAACTCCACGGCGGCTCGGCTTTCTTCTTACAGGCTTTTCGTTGAACACCTTCTGGACCCGGACCAGCCGGCGGCAACTCGTG TCATTGAGGAGGCCCATCATCCTTCCTCGGCCCACTCACTTCTGGCTCAGTACTTCGCCCAAACAGCTGATGCCTCCAGCTCATGTGGGTCGTTGCTCAA TGATATCAACCGAGTACGGGTCGCGATCAGGACCCTCAAATCGGCCCTCAAATCTCTAGAAACCGGTTCGATACACAATTCGGATGACCAATTTCAAGTC ATACTGAGCCAACTAGCTACATTTGCGGACACACGTAACCCGTTCAACAAGTCTGATCGATCCCCAGTTATGATTCGATCCGCTCAAACAAGTTGCACAA AACTACTTAAACCGCTCGAATCGATCCGTGACAAGGCTTACCCTTTTCTCTTTCCTGCATAA
AA sequence Show only first row Show all	>Lus10027501 pacid=23144625 polypeptide=Lus10027501 locus=Lus10027501.g ID=Lus10027501.BGIv1.0 annot-version=v1.0 MSLKGYENTATRNIITWLNNRTINPTLKISQFVLQIIVHYETKTEFSLDQLLFNLRFWCCTAYQPTAVREEYANAFRTESYLEFWTRVFTASDGGGSATG IPANSTNSTAARLSSYRLFVEHLLDPDQPAATRVIEEAHHPSSAHSLLAQYFAQTADASSSCGSLLNDINRVRVAIRTLKSALKSLETGSIHNSDDQFQV ILSQLATFADTRNPFNKSDRSPVMIRSAQTSCTKLLKPLESIRDKAYPFLFPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49070			Protein of unknown function (D...		Lus10027501 [exp]	0	1
AT1G29690		CAD1	constitutively activated cell ...		Lus10002768 [exp]	6.9	0.8052
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10013832 [exp]	7.4	0.8080
AT5G17820			Peroxidase superfamily protein...		Lus10020311 [exp]	10.2	0.7479
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10040243 [exp]	11.8	0.7430
AT5G17680			disease resistance protein (TI...		Lus10030345 [exp]	12.2	0.7955
AT4G18950			Integrin-linked protein kinase...		Lus10029277 [exp]	13.6	0.7279
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10024075 [exp]	16.5	0.7790
AT4G05400			copper ion binding (.1.2)		Lus10031070 [exp]	17.4	0.7303
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Lus10035071 [exp]	17.7	0.7536
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10015705 [exp]	23.9	0.7281

Compare expression of checked genes

Lus10027501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.