Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23950 153 / 1e-45 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G07310 97 / 3e-23 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G13350 54 / 3e-08 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G01200 53 / 6e-08 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G04360 44 / 6e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G45760 42 / 0.0002 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) AT2G33320 42 / 0.0004 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039259 [exp] 325 / 2e-112 AT5G23950 160 / 3e-48 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10005867 [exp] 110 / 4e-28 AT1G07310 206 / 3e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10040692 [exp] 105 / 2e-26 AT1G07310 189 / 2e-57 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10018213 [exp] 62 / 4e-11 AT1G07310 94 / 1e-22 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10003570 [exp] 57 / 5e-09 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 56 / 2e-08 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014466 [exp] 55 / 3e-08 AT1G04540 245 / 7e-76 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10036571 [exp] 46 / 1e-05 AT2G45760 105 / 2e-28 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10040923 [exp] 41 / 0.0003 AT2G45760 110 / 4e-30 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144600 [exp] 167 / 1e-50 AT5G23950 166 / 2e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G064900 [exp] 112 / 3e-29 AT1G07310 150 / 1e-42 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G043300 [exp] 102 / 3e-25 AT1G07310 205 / 9e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G249300 [exp] 99 / 5e-24 AT1G07310 224 / 1e-71 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G024200 [exp] 62 / 4e-11 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G021300 [exp] 57 / 3e-09 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 57 / 5e-09 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G172300 [exp] 57 / 6e-09 AT2G33320 265 / 8e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G065300 [exp] 55 / 2e-08 AT2G13350 261 / 6e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G078600 [exp] 52 / 7e-08 AT2G45760 105 / 2e-28 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10027502 pacid=23144531 polypeptide=Lus10027502 locus=Lus10027502.g ID=Lus10027502.BGIv1.0 annot-version=v1.0 ATGGAAGTGGTGATCTCCTCCGCCAAGGACTTAAAAAACATCAACTGGGAGTACGGCACCCTCCGCCCATACGCCGTCGTTTGGGTCGACCCAGACAAGA AATCCTCCACCAGAGTCGACGAGGAAGGCGACAACTTCCCCGTCTGGGACCAGACCTTAACCATCCCTCTCCCGCCGTCGGGATCCCTCGAGTCCCACGT CCTCCACGTGGACATCGTCCACGCCGCCCGTCCCCACGAGGACACCAAGCCCCTCATCGGATCCGCCAAGCTCCCTCTCCGCGACGTCCTCGACGACGTC GGATTGAGCGGCGAGCTTTTCAAGAAATCCCTCACTCTAAAGCGCCCCTCCGGCAGGCCCCACGGGAAAGTGGAGGTAAAGGTTAGCGTTAGGGAGATCA GGTATCACGCGCCTGATGCCTACTACGCGCCTCCTTACGGGGTCCCACCTCCCGCCTCATCCGGATCACGTGATCACTACGCCTCTGGGCCTCCTCCTTT GGGTTATGGGGCTCCGTACGGATCCGCTCCCTACGGGTATGGAGCTCCGGCTCCAGTTCAGCAGCCGTATGGATATTCTGACCCGGCTCCATACGGTGGG GGATATAACAATGCTCCGCCGCAGCAAGGGTACGGGGGGGCGGCGGGTTACACCGGTGGAGAGGAGAAGAAGAAGAGTAAGTTTGGAGGGATGGGGACGG GATTGGCTGTGGGAGCGGTGGCTGGGGCTCTAGGTGGAATCGCGTTGGTGGAAGGGTTTGATGCGTTGGAGGATAAGATAGCTGATGATGCGGCGGAGAA GGTGGAGGAGGACTTGGGATATGACGACGGCGACGAATAG
AA sequence Show only first row Show all	>Lus10027502 pacid=23144531 polypeptide=Lus10027502 locus=Lus10027502.g ID=Lus10027502.BGIv1.0 annot-version=v1.0 MEVVISSAKDLKNINWEYGTLRPYAVVWVDPDKKSSTRVDEEGDNFPVWDQTLTIPLPPSGSLESHVLHVDIVHAARPHEDTKPLIGSAKLPLRDVLDDV GLSGELFKKSLTLKRPSGRPHGKVEVKVSVREIRYHAPDAYYAPPYGVPPPASSGSRDHYASGPPPLGYGAPYGSAPYGYGAPAPVQQPYGYSDPAPYGG GYNNAPPQQGYGGAAGYTGGEEKKKSKFGGMGTGLAVGAVAGALGGIALVEGFDALEDKIADDAAEKVEEDLGYDDGDE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23950			Calcium-dependent lipid-bindin...		Lus10027502 [exp]	0	1
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	2.2	0.9658
AT2G46600			Calcium-binding EF-hand family...		Lus10030227 [exp]	3.5	0.9490
AT2G46600			Calcium-binding EF-hand family...		Lus10005985 [exp]	5.5	0.9485
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	11.8	0.9443
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10023822 [exp]	15.2	0.9401
AT5G63970			Copine (Calcium-dependent phos...		Lus10020885 [exp]	16.2	0.9313
AT3G53400			unknown protein		Lus10026502 [exp]	16.6	0.9418
AT5G42655			Disease resistance-responsive ...		Lus10032310 [exp]	19.0	0.9439
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10018231 [exp]	21.2	0.9273
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10029226 [exp]	21.6	0.9112

Compare expression of checked genes

Lus10027502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.