Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52490 237 / 9e-78 Fibrillarin family protein (.1) AT5G52470 205 / 3e-65 ATFIB1, ATFBR1, SKIP7, FIB1 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2) AT4G25630 204 / 7e-65 ATFIB2, FIB2 fibrillarin 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039260 [exp] 373 / 5e-132 AT5G52470 312 / 3e-107 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2) Lus10014969 [exp] 361 / 3e-127 AT5G52470 310 / 5e-106 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2) Lus10038851 [exp] 271 / 2e-92 AT5G52470 221 / 9e-72 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144800 [exp] 212 / 6e-68 AT4G25630 463 / 1e-165 fibrillarin 2 (.1) Potri.015G147500 [exp] 210 / 3e-67 AT5G52470 462 / 1e-165 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2) Potri.008G192700 [exp] 150 / 4e-44 AT5G52470 378 / 2e-132 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01269 [flax] [poplar] Fibrillarin Fibrillarin
Representative CDS sequence Show only first row Show all	>Lus10027503 pacid=23144488 polypeptide=Lus10027503 locus=Lus10027503.g ID=Lus10027503.BGIv1.0 annot-version=v1.0 ATGGCGCCACCAAGAGGAGGAAGATCAGGAGGATTCAGAGGAGGTAGGGGTGGCGATGGAGGCCGAGGAAGGGGTAGAGGTGGAGGGAGATTTGGAGGAA GTGGGGGCGGCGGGAGATTCGGCGATAGAGGAAGCGGCATGAAGCCTCGTGGCGGAGGACGTAGCGGAGGAAGAGGAGGAGGCCGCGGTGGCGGCCGCGG TGGAGGCGGAATGAGAGGCGGGAGCAAAGTTATAGTGGAGCCTCATAGACATGAAGGTGTTTTCATTGCCAAGGGCAAAGAAGACGCACTCGTTACCAAG AACCTTGTCCCTGGAGAGGCCGTGTACAATGAGAAGAGGATATCCGTCCAGAATGAAGATGGAACAAAGGTTGAGTACAGGGTTTGGAATCCCTTCAGAT CAAAGTTGGCAGCTGCTATCCTTGGTGGTGTTGACAACATCTGGATTAAACCTGGTGCTAAGGTTCTATACCTTGGAGCAGCATCTGGAACTACTGTCTC TCATGTATCTGACCTTGTTGGACCTGCTAGGATTCTAGCACTGAATGCTTCATACTTCTTGAAGTCTGGTGGTCACTTCGTTATCTCAATCAAGGCAAAC TGCATCGACTCAACAGTGCCAGCCGAGGCTGTGTTTGAGAGTGAGGTGAAGAAGATGACCCAGGAGCAGTTCAAGCCTGCTGAGCAAGTGACATTGGAGC CGTTTGAGAGAGACCATGCTTGTGTCATCGGCGGGTACCGTATGCCCAGGAAGAACAAAGCTTGA
AA sequence Show only first row Show all	>Lus10027503 pacid=23144488 polypeptide=Lus10027503 locus=Lus10027503.g ID=Lus10027503.BGIv1.0 annot-version=v1.0 MAPPRGGRSGGFRGGRGGDGGRGRGRGGGRFGGSGGGGRFGDRGSGMKPRGGGRSGGRGGGRGGGRGGGGMRGGSKVIVEPHRHEGVFIAKGKEDALVTK NLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPARILALNASYFLKSGGHFVISIKAN CIDSTVPAEAVFESEVKKMTQEQFKPAEQVTLEPFERDHACVIGGYRMPRKNKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10027503 [exp]	0	1
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10039260 [exp]	2.2	0.9661
AT2G34570		MEE21	maternal effect embryo arrest ...		Lus10001157 [exp]	2.4	0.9466
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10022832 [exp]	2.4	0.9616
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10002651 [exp]	5.0	0.9494
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	6.0	0.9591
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031761 [exp]	8.8	0.9448
AT3G12390			Nascent polypeptide-associated...		Lus10024109 [exp]	9.7	0.9337
AT2G19540			Transducin family protein / WD...		Lus10024403 [exp]	10.6	0.9388
AT4G02930			GTP binding Elongation factor ...		Lus10027995 [exp]	11.8	0.9500
AT3G66652			fip1 motif-containing protein ...		Lus10016905 [exp]	12.6	0.9416

Compare expression of checked genes

Lus10027503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.