Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25640 682 / 0 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT4G00350 678 / 0 MATE efflux family protein (.1) AT1G47530 497 / 9e-174 MATE efflux family protein (.1) AT3G26590 488 / 8e-170 MATE efflux family protein (.1) AT5G38030 483 / 1e-167 MATE efflux family protein (.1) AT1G12950 479 / 6e-166 RSH2 root hair specific 2 (.1) AT1G23300 471 / 4e-163 MATE efflux family protein (.1) AT5G65380 405 / 1e-137 MATE efflux family protein (.1) AT1G33110 400 / 1e-135 MATE efflux family protein (.1.2) AT1G61890 400 / 3e-135 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039263 [exp] 941 / 0 AT4G25640 691 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10038850 [exp] 820 / 0 AT4G25640 685 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10036374 [exp] 664 / 0 AT4G00350 749 / 0.0 MATE efflux family protein (.1) Lus10014760 [exp] 623 / 0 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 494 / 5e-172 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 490 / 1e-170 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 487 / 1e-169 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 488 / 2e-169 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 487 / 2e-169 AT3G26590 675 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G147600 [exp] 652 / 0 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.012G144900 [exp] 645 / 0 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.002G161200 [exp] 603 / 0 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 505 / 2e-176 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 473 / 9e-164 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 434 / 9e-149 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 426 / 1e-145 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.011G002800 [exp] 421 / 2e-143 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 416 / 1e-141 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 414 / 5e-141 AT3G21690 646 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10027504 pacid=23144585 polypeptide=Lus10027504 locus=Lus10027504.g ID=Lus10027504.BGIv1.0 annot-version=v1.0 ATGGAGGCGCCACTCATCAACCACCACAATAACGAGGCCTCCGGTGGCGGCGACTATGCTCCGGTGAACTCCTTTAAGCAGGTGCGGTCTGTGTTCGTGA TGGAGACGGTGAAGCTGTGGAAGATTGCTGGCCCTATCGCGTTCAACACCTTGTGTCAGTACGGACTCAACTCCGTCACCAACATGTTCGTTGGCCACAT CGGCGAGTTCGAGCTCTCCGCCGTCGCCATTTCCCTCTCCGTCATCAGCACTTTCTCCTTCGGCTTCTTGTTGGGCATGGGGAGCGCGCTGGAGACACTA TGCGGGCAAGCATTCGGAGCAGGACAAGTCCACATGCTAGGAATCTACATGCAAAGATCATGGATAATCCTAACCCTATCATGTTTCGCCTTACTCCCAA TCTACATCTTCGCCACACCAATCCTTACCCTACTAGGACAACAAGAATCCATATCCAACTCAGCAGGCCACTTCACACTCCTCATAATCCCGCAGCTATT CTCCCTGGCGATCAACTTCCCGACCCAGAAGTTCCTCCAGGCTCAGAGCAAAGTCAACGCCCTGGCCTGGATCGCGCTGGGGGCACTCGTCGTGCAGATC CCCCTGCTCTGGCTGTTCATATTCAAGTTCGATTGGGGCACGACAGGCGCTGCCTTGGCTTATGATGTCACCAGCTGGGGAGTTTCCCTGGCTCAGGTGG TTTATGTTGTCGGTTGGTGTAGTGAAGGATGGAGTGGGTTGTCTTGGTTGGCTTTTAAGGATATTTGGGGGTTTGTGAAGCTGTCTTTTGCTTCAGCTGT TATGCTTTGTTTGGAGATTTGGTATATTATGAGTATCATTGTGCTTACTGGGCATCTCAATAATGCTGTCACTGCTGTTGGATCCCTTTCTATATGCATG AACTTCAACGGCTGGGAAGGGATGCTGTTCATCGGGATAAATGCAGCCATAAGTGTTCGAGTATCGAACGAGCTAGGATCAGGACGCCCCAGAGGAGCGA AATACGCAGTCTACGCAATCGTATTCCAATCCTTCCTAATCGGACTATTCTGCATGGTAGCGGTGCTGATAACAAAGGACTACTTCGCCATAATCTTCAC CAGCAGCCAAGACCTGCAGACAGCAGTCTCAAAGCTAGCTTTCCTTCTGGGAATCACCATGGTTCTCAACAGTGTCCAGCCTGTCATTTCGGGCGTGGCG GTCGGAGCAGGATGGCAAGGACTAGTGGCGTACATAAACATATTCTGCTACTACGTGTTTGGTCTTCCGCTTGGGTTTCTGCTCGGATACAAAGCTAACT TGGGAGTCACGGGAATATGGGCAGGGATGATAGCAGGGACAGGGTTGCAGACCGTGTTATTGTTGTTTGTTCTGTATAAGACTAACTGGAATAAAGAGGT GGAGCAGAGTGCTGAGAGAATGAGGAAGTGGGGTGGCCAGGAAATACAAGCTTTTAATTACAAACACTAA
AA sequence Show only first row Show all	>Lus10027504 pacid=23144585 polypeptide=Lus10027504 locus=Lus10027504.g ID=Lus10027504.BGIv1.0 annot-version=v1.0 MEAPLINHHNNEASGGGDYAPVNSFKQVRSVFVMETVKLWKIAGPIAFNTLCQYGLNSVTNMFVGHIGEFELSAVAISLSVISTFSFGFLLGMGSALETL CGQAFGAGQVHMLGIYMQRSWIILTLSCFALLPIYIFATPILTLLGQQESISNSAGHFTLLIIPQLFSLAINFPTQKFLQAQSKVNALAWIALGALVVQI PLLWLFIFKFDWGTTGAALAYDVTSWGVSLAQVVYVVGWCSEGWSGLSWLAFKDIWGFVKLSFASAVMLCLEIWYIMSIIVLTGHLNNAVTAVGSLSICM NFNGWEGMLFIGINAAISVRVSNELGSGRPRGAKYAVYAIVFQSFLIGLFCMVAVLITKDYFAIIFTSSQDLQTAVSKLAFLLGITMVLNSVQPVISGVA VGAGWQGLVAYINIFCYYVFGLPLGFLLGYKANLGVTGIWAGMIAGTGLQTVLLLFVLYKTNWNKEVEQSAERMRKWGGQEIQAFNYKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Lus10027504 [exp]	0	1
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10010097 [exp]	6.0	0.8102
					Lus10010603 [exp]	6.3	0.7848
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040525 [exp]	10.2	0.7611
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040526 [exp]	10.5	0.7773
AT1G20925			Auxin efflux carrier family pr...		Lus10030715 [exp]	11.6	0.7485
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10023670 [exp]	15.1	0.7451
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10021158 [exp]	17.5	0.7387
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10014228 [exp]	18.3	0.7345
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011745 [exp]	19.2	0.7288
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041912 [exp]	20.5	0.7197

Compare expression of checked genes

Lus10027504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.