Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52520 851 / 0 PRORS1, OVA6 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1) AT3G62120 380 / 4e-126 Class II aaRS and biotin synthetases superfamily protein (.1.2) AT5G10880 129 / 3e-33 tRNA synthetase-related / tRNA ligase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039267 [exp] 997 / 0 AT5G52520 929 / 0.0 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1) Lus10016281 [exp] 361 / 4e-119 AT3G62120 876 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G142500 [exp] 892 / 0 AT5G52520 878 / 0.0 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1) Potri.002G187000 [exp] 395 / 1e-132 AT3G62120 827 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1.2) Potri.014G112400 [exp] 394 / 4e-132 AT3G62120 812 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1.2) Potri.004G078932 [exp] 219 / 4e-68 AT5G52520 204 / 1e-62 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1) Potri.004G078866 [exp] 204 / 2e-63 AT5G52520 215 / 3e-68 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF03129 [flax] [poplar] HGTP_anticodon Anticodon binding domain CL0040 [flax] [poplar] tRNA_synt_II PF00587 [flax] [poplar] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) CL0040 [flax] [poplar] PF09180 [flax] [poplar] ProRS-C_1 Prolyl-tRNA synthetase, C-terminal
Representative CDS sequence Show only first row Show all	>Lus10027506 pacid=23144474 polypeptide=Lus10027506 locus=Lus10027506.g ID=Lus10027506.BGIv1.0 annot-version=v1.0 ATGGTAGCCTCTCTCCGGCTACCGTCGCTGACCTCACTCTTCTTCTCTTCTACCTATTCCCAGTCTCCTCTCCGAGCTCCGGTGTTCTTCCGCCGCCGCC ACGAATTCCGGCGGCAGCCTCTGATTGCCGCAAGGTTTTCAGCCGAGAGTGCTGCTGCTTCCACCAGTCAACCTAGCAAGACAGAAAACCAGAAGAACAA GGTTAATCAGGATCGAGTCATCACTCCTCGTTCTCAGGACTTCAATGCTTGGTACCTGGATGTGCTTTCGAATGCCGAGTTGTCCGATTATGGTCCTGTT CGTGGAACTATGGTCATTCGTCCTTACGGCTACGCTATCTGGGAGGCAATTCAGGATTATTTGAATGTCAAATTCAAGGAGACTGGGCATAGCAACATGT ATTTCCCACAGTTTATACCGTATTCCTTTATAGAGAAAGAAGCTAGTCATGTGGAGGGATTCAGTCCTGAACTTGCTGTTGTAACCATTGGTGGAGGAAA GGAGCTCGAAGAAAAACTTGTGGTGCGACCTACCAGTGAAACAATAGTGAATCACATGTTCACTCAGTGGATTCATAGTTACCGTGATCTACCTCTATTG ATTAATCAGTGGGCGAATGTCACGAGGTGGGAAATGCGTACAAAACCGTTTGTGAGGACTCTTGAGTTTTTGTGGCAGGAGGGGCATACCGCCCATGCAA CTGCAGAAGAAGCAGAAAAAGAGGCAATGCAAATGATTGATGTCTATACAAAATTTGCTTATGAGGAGGCTGCAATACCAGTGATTGTAGGTAGGAAGTC CAGGGAAGAAACGTTTGCTGGAGCTGTTAGAACATATACTATAGAGGCTATGATGGGTGATCGAAAGGCATTGCAGGCTGGAACCAGCCATAACCTTGGG CAGAATTTTTCCCGGGCGTTTGGAACACAGTTTGCTGATGAAAATGGCCAGAGGCAACATATATGGCAAACATCATGGGCCATCAGTACACGTTTTATTG GTGGTATTATCATGACTCATGGCGATGATGCTGGCCTAATGCTTCCTCCCAGGCTTGCACCAATTCAGGTAGTGATAGTGCCCATATGGAAGAAGGATGA TGAAAAAGCTGGGGTTCTGAATGCTGCCTCCTCAGTGAAAGAAGTTCTGCAGTCTGCCGGTCTGAAAGTAAAATTTGATGATACGGACACGAGAACACCC GGATGGAAGTTCAATTTCTGGGAAATGAAGGGAGTCCCTCTGAGGATTGAGATTGGTCCTCGGGATGTTTCAAGTGGAAGTGTAGTCATATCAAGGAGGG ACGTCCCTGGAAAGCAAGGCAAAGTTTTTGGAATATCAATGGAGCCTTTAATTTTAGTAAGTTACGTCAAAGACAAACTAGATGAGGTCCAAGCATCTCT GCTGGAAAAGGCAACATTGTTTCGAGACAGTAACATTGTGGACGTGAGCTCATATGATGAACTGAAAGAAGCAATATCGGCGGGAAAATGGGCAAGGGGT CCTTGGTCTGCTAGCGATGAAGATGAAGCAAGAGTGAAAGAAGAAACCGGAGCAACAATCCGGTGTTTCCCGTTCGACCAGCCAGAGGGAACCAAAACAT GCTTGATGACAGGCCAACCAGCCAAAGAATTTGCGATTTTCGCCAAGTCCTACTAG
AA sequence Show only first row Show all	>Lus10027506 pacid=23144474 polypeptide=Lus10027506 locus=Lus10027506.g ID=Lus10027506.BGIv1.0 annot-version=v1.0 MVASLRLPSLTSLFFSSTYSQSPLRAPVFFRRRHEFRRQPLIAARFSAESAAASTSQPSKTENQKNKVNQDRVITPRSQDFNAWYLDVLSNAELSDYGPV RGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELAVVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLL INQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATAEEAEKEAMQMIDVYTKFAYEEAAIPVIVGRKSREETFAGAVRTYTIEAMMGDRKALQAGTSHNLG QNFSRAFGTQFADENGQRQHIWQTSWAISTRFIGGIIMTHGDDAGLMLPPRLAPIQVVIVPIWKKDDEKAGVLNAASSVKEVLQSAGLKVKFDDTDTRTP GWKFNFWEMKGVPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPLILVSYVKDKLDEVQASLLEKATLFRDSNIVDVSSYDELKEAISAGKWARG PWSASDEDEARVKEETGATIRCFPFDQPEGTKTCLMTGQPAKEFAIFAKSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10027506 [exp]	0	1
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10012512 [exp]	2.4	0.8635
AT4G33480			unknown protein		Lus10020876 [exp]	4.2	0.8371
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10040477 [exp]	6.0	0.8493
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10028945 [exp]	7.1	0.7869
AT5G54880			DTW domain-containing protein ...		Lus10000447 [exp]	10.0	0.7884
AT4G33480			unknown protein		Lus10002086 [exp]	10.4	0.7465
AT2G45150		CDS4	cytidinediphosphate diacylglyc...		Lus10009281 [exp]	12.0	0.7507
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10039044 [exp]	12.4	0.8203
AT3G51140			Protein of unknown function (D...		Lus10041816 [exp]	14.5	0.8277
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10039254 [exp]	14.7	0.8347

Compare expression of checked genes

Lus10027506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.