Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24000 443 / 4e-144 Protein of unknown function (DUF819) (.1) AT1G01580 416 / 3e-130 FRD1, ATFRO2, FRO2 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) AT5G52540 405 / 2e-129 Protein of unknown function (DUF819) (.1) AT1G01590 392 / 2e-121 ATFRO1, FRO1 ferric reduction oxidase 1 (.1) AT5G23980 377 / 5e-116 FRO2, ATFRO4, FRO4 ferric reduction oxidase 4 (.1) AT1G23020 371 / 2e-113 ATFRO3, FRO3 ferric reduction oxidase 3 (.1.2) AT5G23990 368 / 4e-113 ATFRO5, FRO5 ferric reduction oxidase 5 (.1) AT5G50160 172 / 4e-44 ATFRO8, FRO8 ferric reduction oxidase 8 (.1) AT5G49730 157 / 3e-39 ATFRO6, FRO6 ferric reduction oxidase 6 (.1) AT5G49740 155 / 9e-39 ATFRO7, FRO7 ferric reduction oxidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039268 [exp] 762 / 0 AT1G01580 722 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10039272 [exp] 694 / 0 AT5G24000 498 / 3e-175 Protein of unknown function (DUF819) (.1) Lus10039273 [exp] 428 / 3e-138 AT5G52540 538 / 0.0 Protein of unknown function (DUF819) (.1) Lus10027508 [exp] 421 / 1e-135 AT5G52540 531 / 0.0 Protein of unknown function (DUF819) (.1) Lus10036379 [exp] 386 / 5e-119 AT1G01580 691 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10036381 [exp] 345 / 1e-103 AT1G01580 701 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10014957 [exp] 315 / 2e-93 AT5G23980 665 / 0.0 ferric reduction oxidase 4 (.1) Lus10019488 [exp] 182 / 3e-47 AT5G50160 691 / 0.0 ferric reduction oxidase 8 (.1) Lus10007586 [exp] 161 / 2e-40 AT5G49740 867 / 0.0 ferric reduction oxidase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G142841 [exp] 490 / 9e-162 AT5G24000 457 / 5e-159 Protein of unknown function (DUF819) (.1) Potri.004G079300 [exp] 453 / 7e-148 AT5G52540 439 / 8e-152 Protein of unknown function (DUF819) (.1) Potri.004G079100 [exp] 448 / 2e-142 AT1G01580 692 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.017G142700 [exp] 441 / 1e-139 AT1G01580 677 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.014G088000 [exp] 425 / 8e-134 AT1G01580 762 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.017G142800 [exp] 405 / 2e-126 AT5G23980 894 / 0.0 ferric reduction oxidase 4 (.1) Potri.004G079200 [exp] 392 / 1e-121 AT5G23980 870 / 0.0 ferric reduction oxidase 4 (.1) Potri.012G084800 [exp] 196 / 4e-52 AT5G50160 657 / 0.0 ferric reduction oxidase 8 (.1) Potri.015G083200 [exp] 172 / 6e-44 AT5G50160 650 / 0.0 ferric reduction oxidase 8 (.1) Potri.001G079000 [exp] 159 / 7e-40 AT5G49730 886 / 0.0 ferric reduction oxidase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF05684 [flax] [poplar] DUF819 Protein of unknown function (DUF819) CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10027507 pacid=23144454 polypeptide=Lus10027507 locus=Lus10027507.g ID=Lus10027507.BGIv1.0 annot-version=v1.0 ATGGCTTCCGCCGTGTCGCAGTTACTTCATCGTCCTTTCTCATCACTCGCACCCACCTCCTTTTCTTCTTCTTTTTCTCCTTCGGCTTCCTTTTCCTTAC TATCTCTCGGCGGTAACATCTCCGTCACACTCTCAACACACAGTGAAAATTCTCCACGGATATGGTGGAAGAAGAACAGGACACCTAGCATGCTGACAGA AGCATTCTCGCCGCTGAGGAATCCGATTATATCTCCCGACGACCACTGGGGAACCTGGACGGCTCTCTTCGCCGCCGGAGCTTTTGGTGTCTGGTCGGAA AGAACGAAGCTAGGGAGCATGGTGAGTGCGGCGTTGGTGAGCACTTTGGTGGGGCTAGCTGCCAGCAATTTGGGGATAATCCCTTACGAAGCGAAGGCGT ATTCCATCGTAATGGAGTTTCTACTTCCTATTACGGTTCCTTTGCTGCTGTTCAGAGCTGACTTGCGAAATGTAATTCAGTCCACTGGAAAGCTTCTCTT GGCTTTCCTTCTTGGTTCAGTGGGAACTGTTATAGGAACTTTAGTGGCATTTCTGCTGGTGCCAATGAGATCTCTTGGTCAAGACAACTGGAAGATAGCT TCTGCTCTGATGGGAAGCTATATCGGCGGAGCAGGAATAGCCGCAGACAATGTTCTTTCTGCATTATACTTCATGGTCCTCTTTGCATTAGCTGCAAGAA TACCTCGAGAGACAACAGCAACGTCGTCAACTAACGAGGTTGAAGCGGCTGCTAAGTTAGACCCTAAAGCAAATAACTCAGTCCTACAGACGGCTACAGC TCTTGCCGTCTCATTTTCCATATGCAAGGCTGCAACTTTCCTCACTCAGTCGTTCAAGATTCAAGGAGGCACTCTCCCAGCTGTGACCGCTATAGTTGTT ATCCTAGCAACATCATTTCCGAAACAATTTCGTCACCTCGCGCCTACTGGAGATACTCTAGCTGTGGTTCTGATGCAGGTGTTCTTTGCTGTGGTGGGAG CTGGTGGGAGCATATTGAATGTGATAAACACAGCACCTAGTATATTCCTTTTTGCTCTAATTCAAGTGACTGTACATCTTGCTGTGGTTCTGGGATTGGG GAAGCTGATGGGGTTCGATCTGAAGCTGTTGGTTCTGGCATCGAACGCCAATGTCGGAGGCCCTACGACAGCTTGCGGAATGGCTACAGCTAAAGGATGG AGTTCTCTTGTTGTTCCGGCGATTCTTGCCGGCATCTTTGGCAAAGTAATTCCTGTTGCCGCCGCCGACGCCGCCTCCGAGCCGCCCAGGGATCGAATCT CAGAACTTCCAGAAGAAGTCCTCCACGACATCCTCTGGCGACTAGACTTCCCCACACAAGCCGCAAAGTCCATTGCCCTTTCCAGGCGATGGCGAAGAGT TTTGAGATCCTACCCTGTACTGGAATTCGACGAGACCAAATGCCGCCGGCGCAACAGTCTTGTAAAATTCGCAGAAGCCTCGATCGAGAAGTTTTCTCGG TACAACCGATTCGCCATCGAAACCCTGGATATCACAATTCAGGGTTCGGGTGACCAACTTTCCAGATCCCCTGTTCTTGAGAAGCTTCTGGAGTTGGCGA CGGAGAGGAAAGCCGAAAATGTCATGATCAAGCGTTGGCTCGGTGGCCCATCACTTGCACTCAAGATGCTGAGTATCAGCCACGTGAATCGGGTCACCAA GCTTGTACTCGTAGCCCCTCAACTCGAGCATTTAGAGATCCATGGAGGTAATTTCTCAGGCCCAAGACTTCAGGATGTGATCTCTAATCTCCCATGTCTG AAATCCCTAGCCCTAGGTGGGTTCCGTGGAGTGGGTTCCAAGAAGCTTAACCTGAACCTTTCGAGTAGTCCGAATCTGGAGGAAGTCAAGCTCTGGGGAT ACTTCTCGTGTTCGTCTTCATCGGTTAACATCTTGGTCTGGCTAATGTCTTCGACCAACATCTTCTACCTTCGTTGGATGCCTCGCGTTCATGACGAGAC GAATTTCACCTTCATCGGAACTCAAGGTCAAAACACTCTGATCTATACACTTCCAATCATTTTCATTGCTGTCATGGCTTGCCTTTATATCCATTTGGAA AAGAAACTTGCCAATCACGGAATCAGTCACCAGAGGATCTTCGGTTCTCCAAATGGTCGGCCAAACTTCAGAGTCGAGCATCAAATACCATATGTGGTTG GGGCATATGGCGATGATCCTTTCACGTTGCACGGTCTATGTTACATCGTGTTCTGGGCTGAAACAACTCAACTCCTTCAGGATGATCTATTGGTCGCGAA CGTGGCAGGGGAAGTTGCGTTGGCTGCCGGATTGCTCATGTGGGCGATGAGCTTTACTTGCATCAGAAGGAAGTTCTTCCAGCTCTTCTTCTACAGGCAT CATCTCTACATTGTGTTCGTTATCTTCTACGTGTTTCATGTCGGCTTCTCCTCTGTCTGTACTATCCTTCCCGGCATCTACCTCTTTGCGATTGATCGCT TCCGGAGATTGCTTCAATCCCAACAGAGGGTTTGCCTAGTTTCTACTCGCGTCTTACCTTGTCAAGCTGTGGAGTTGAATTTCGCCAAGAACTCACCTAC CATGTTCATAAACATCCCAAGCATTTCGAAACTGCAATGGCATCCGTTCTCAGTAACATCAAGCAGCAAACTGGAAGCTGACAGGATAAGCGTCGTGATC AAAAGCGAAGGACATTGGACTACGAAACTGTATCAAAATCTCTCATCTCCTCCGCCAAGAAATCACTTTGAGGTCTCCGTTGAAGGTCCTTATGGGCCGA CTTCTGCTGAATTCACGAGGCACGATATGCTGGTACTGGTGAGCGGAGGGAGCGGGATAACCCCGTTCATCTCGATCATACGTGAAATCATCTGCTTATC AAACACGAAGGGCGCCAAAATTCCCAAAGTGCTCTTGATATGCGCTTTCAAACGCTCCACGGATCTCACAATCCTGGACCTTCTCCTTCCAGTTCCTGAG AGGAGCTCAACAGACCGAACCCTTGACTTTTCCCTCGCGGAGCTGCAGATCAAAGCTTTCGGCACTAGAGAAAGAAAGAGGAAGCTGGAAGAGACGGAAC AACAGGGCCAGATTCAAACCATATGGTTCCGGTCAAACCAGACAGGCATACCAATGGACGCAGTACTAGGGCCGAGCAGCTGGATCTGGTTAGGAGGGAT CATTTCAGGATCATTTGCCGTTTACTTGGTGCTGATGGGGCTTATGACAGAATACTACATATACCCTATCGACGGCAACACCAATCAAAGATTCTCAAAC TCCGGCAAAGGCAGCACTGAACATCCTCTCCATCTGTGTGGCAATTGTGGGTTTCTATGGAACATGAGAGCTAAGGCAAGTGAGAATATCCGAGTTGTGG ACAGAGAGAGGCCAGCGCCGACAATAAATTTGGGCGAAGGAAATCGAGACGTTGAGATGGAAGTCGAGAGCCAGCCTGAGAATGCAATTCGCCAAGCAAC AACGATCCATTTCGGGAAAAGGCCAGACACGAAACGAATACTGCTGGATGTTGAAGGAGAGAATGTGGGAGTGCTAGCAAGTGGTCCTAAGAAGCTGCGG CAGAGAGTGGCGAACTTCTGTTCGACGTCAATGGCTGATAACCTACACTTCCATTCTATCAGCTTCACTTAG
AA sequence Show only first row Show all	>Lus10027507 pacid=23144454 polypeptide=Lus10027507 locus=Lus10027507.g ID=Lus10027507.BGIv1.0 annot-version=v1.0 MASAVSQLLHRPFSSLAPTSFSSSFSPSASFSLLSLGGNISVTLSTHSENSPRIWWKKNRTPSMLTEAFSPLRNPIISPDDHWGTWTALFAAGAFGVWSE RTKLGSMVSAALVSTLVGLAASNLGIIPYEAKAYSIVMEFLLPITVPLLLFRADLRNVIQSTGKLLLAFLLGSVGTVIGTLVAFLLVPMRSLGQDNWKIA SALMGSYIGGAGIAADNVLSALYFMVLFALAARIPRETTATSSTNEVEAAAKLDPKANNSVLQTATALAVSFSICKAATFLTQSFKIQGGTLPAVTAIVV ILATSFPKQFRHLAPTGDTLAVVLMQVFFAVVGAGGSILNVINTAPSIFLFALIQVTVHLAVVLGLGKLMGFDLKLLVLASNANVGGPTTACGMATAKGW SSLVVPAILAGIFGKVIPVAAADAASEPPRDRISELPEEVLHDILWRLDFPTQAAKSIALSRRWRRVLRSYPVLEFDETKCRRRNSLVKFAEASIEKFSR YNRFAIETLDITIQGSGDQLSRSPVLEKLLELATERKAENVMIKRWLGGPSLALKMLSISHVNRVTKLVLVAPQLEHLEIHGGNFSGPRLQDVISNLPCL KSLALGGFRGVGSKKLNLNLSSSPNLEEVKLWGYFSCSSSSVNILVWLMSSTNIFYLRWMPRVHDETNFTFIGTQGQNTLIYTLPIIFIAVMACLYIHLE KKLANHGISHQRIFGSPNGRPNFRVEHQIPYVVGAYGDDPFTLHGLCYIVFWAETTQLLQDDLLVANVAGEVALAAGLLMWAMSFTCIRRKFFQLFFYRH HLYIVFVIFYVFHVGFSSVCTILPGIYLFAIDRFRRLLQSQQRVCLVSTRVLPCQAVELNFAKNSPTMFINIPSISKLQWHPFSVTSSSKLEADRISVVI KSEGHWTTKLYQNLSSPPPRNHFEVSVEGPYGPTSAEFTRHDMLVLVSGGSGITPFISIIREIICLSNTKGAKIPKVLLICAFKRSTDLTILDLLLPVPE RSSTDRTLDFSLAELQIKAFGTRERKRKLEETEQQGQIQTIWFRSNQTGIPMDAVLGPSSWIWLGGIISGSFAVYLVLMGLMTEYYIYPIDGNTNQRFSN SGKGSTEHPLHLCGNCGFLWNMRAKASENIRVVDRERPAPTINLGEGNRDVEMEVESQPENAIRQATTIHFGKRPDTKRILLDVEGENVGVLASGPKKLR QRVANFCSTSMADNLHFHSISFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10027507 [exp]	0	1
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10020046 [exp]	2.6	0.8555
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10034596 [exp]	3.5	0.8406
AT4G28600		NPGR2	no pollen germination related ...		Lus10023748 [exp]	3.5	0.8508
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10042070 [exp]	5.7	0.8023
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Lus10026815 [exp]	7.2	0.8191
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Lus10013115 [exp]	9.5	0.8140
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Lus10033388 [exp]	9.8	0.7674
					Lus10033157 [exp]	10.6	0.7765
AT5G59250			Major facilitator superfamily ...		Lus10040772 [exp]	11.2	0.7733
AT5G14370			CCT motif family protein (.1)		Lus10014886 [exp]	12.6	0.8179

Compare expression of checked genes

Lus10027507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.