Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52540 461 / 3e-160 Protein of unknown function (DUF819) (.1) AT5G24000 374 / 1e-126 Protein of unknown function (DUF819) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039273 [exp] 693 / 0 AT5G52540 538 / 0.0 Protein of unknown function (DUF819) (.1) Lus10039272 [exp] 413 / 2e-141 AT5G24000 498 / 3e-175 Protein of unknown function (DUF819) (.1) Lus10027507 [exp] 379 / 3e-120 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G079300 [exp] 476 / 2e-166 AT5G52540 439 / 8e-152 Protein of unknown function (DUF819) (.1) Potri.017G142841 [exp] 432 / 5e-149 AT5G24000 457 / 5e-159 Protein of unknown function (DUF819) (.1) Potri.017G142882 [exp] 94 / 1e-13 AT5G24000 77 / 2e-16 Protein of unknown function (DUF819) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF05684 [flax] [poplar] DUF819 Protein of unknown function (DUF819)
Representative CDS sequence Show only first row Show all	>Lus10027508 pacid=23144568 polypeptide=Lus10027508 locus=Lus10027508.g ID=Lus10027508.BGIv1.0 annot-version=v1.0 ATGGCGTCAAAGCTTCTCTTCTCCCACATCACCCGCTCGCCAACACCGAATCCTGAGATCCAACTCTCGCGATTCCGTCCTCCCACACTAAAAAATCTCA CCGTAGCCTCATCGTCGCCAAAATCCAGTCCCCTTTCCATCTCATCGCCGCCGTCAAGCCACAACTTCCCATCTCCTCTTCCCAATCGGACACCACCACA CCCGAAATCGACCCGATCCGTAACCGTCAGATCCACCTTCAATCTCCCTCTCATTTCTCCCCACGACAAATGGGGCATGTGGACTACCCTCTTCGCCGCC GGCGCTTTCGGCATCTGGTCGGAGAGGACGAAAATCGGAAGCGCGTTGAGCGGAGCATTAGTAAGCACTTTAGTTGGATTAGCGGCTAGTAATCTAGGGT TAATATCATGTGAGTCTCCAGCTTATCCGATCGTTCTGGAGTTCCTTTTACCATTAGCAGTTCCTTTGCTTCTGTTTCGAGCTGACTTGCGCCGTGTGAT TCAGTCCACTGGCAAACTTCTCTTGGCTTTCCTCATTGGATCAGGTGCTACCACGATTGGAACAGTGTTGGCTTATCTTGCTGTGCCGATGAGATCACTT GGTACTGATAGCTGGAAAATTGCAGCTGCTCTCATGGGCAGACATATTGGTGGAGCTGTTAACTATGTGGCCATTGCGGATGCACTTGGTGTAACACCAT CAGTTCTTGCTGCTGGACTGGCTGCTGATAATGTTATCTGCGCAGTGTATTTCACCACACTTTTCGCAATTGCAGCCCGAGTCCCGCCAGAGTCTTCAAC CTCATCTAATGATGTGGATGCTTTAACTGATACCGGTGGTGACAAGCTTCCTGTTCTCGAAGCTGCAACTTCCCTCGCGGTATCTTTCGCCATCTGCAAG GCTGGTTCTTACTTAACAAAGTCTATAGGAATGCAAGGAGGACCCTTGCCCGCCATAACTGCAATTGTCGTCGTATTAGCAACTGCATTTCCTTCTCAAT TCAACTACCTCGCCCCATCTGGGGAAGCCATGGCGATGATTTTGATGCAGGTGTTCTTCGCAGTGGTTGGGGCGAGTGGGAACGTGTGGTCGGTGATCCA GACTGCCCCGAGTATATTCATGTTCGCTCTTGTACAGATTGCGGTCCATCTGGGTGTAATCCTTGCTGTGGGGAGGTTGTTTGGGCTTGACCTGAAACTG TTGCTTTTGGCTTCAAATGCCAACGTTGGAGGGCCTACTACGGCTTGTGGAATGGCTACTGCTAAAGGGTGGAACTCCATGGTTGTTCCTGCTATTCTCG CCGGTATCTTTGGTATCGCCATTGCTACTTTTCTTGGGATCGGATTCGGGTCTATGGTTCTTAAGTACATGTAA
AA sequence Show only first row Show all	>Lus10027508 pacid=23144568 polypeptide=Lus10027508 locus=Lus10027508.g ID=Lus10027508.BGIv1.0 annot-version=v1.0 MASKLLFSHITRSPTPNPEIQLSRFRPPTLKNLTVASSSPKSSPLSISSPPSSHNFPSPLPNRTPPHPKSTRSVTVRSTFNLPLISPHDKWGMWTTLFAA GAFGIWSERTKIGSALSGALVSTLVGLAASNLGLISCESPAYPIVLEFLLPLAVPLLLFRADLRRVIQSTGKLLLAFLIGSGATTIGTVLAYLAVPMRSL GTDSWKIAAALMGRHIGGAVNYVAIADALGVTPSVLAAGLAADNVICAVYFTTLFAIAARVPPESSTSSNDVDALTDTGGDKLPVLEAATSLAVSFAICK AGSYLTKSIGMQGGPLPAITAIVVVLATAFPSQFNYLAPSGEAMAMILMQVFFAVVGASGNVWSVIQTAPSIFMFALVQIAVHLGVILAVGRLFGLDLKL LLLASNANVGGPTTACGMATAKGWNSMVVPAILAGIFGIAIATFLGIGFGSMVLKYM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52540			Protein of unknown function (D...		Lus10027508 [exp]	0	1
AT2G26730			Leucine-rich repeat protein ki...		Lus10033065 [exp]	2.0	0.8956
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10023115 [exp]	3.2	0.8849
AT5G64970			Mitochondrial substrate carrie...		Lus10014334 [exp]	8.9	0.8549
AT3G53380			Concanavalin A-like lectin pro...		Lus10019923 [exp]	11.2	0.8643
AT1G35780			unknown protein		Lus10009931 [exp]	11.3	0.8309
AT5G41460			Protein of unknown function (D...		Lus10024663 [exp]	11.7	0.8559
AT3G52610			unknown protein		Lus10014214 [exp]	11.7	0.7875
AT2G14835			RING/U-box superfamily protein...		Lus10002131 [exp]	13.5	0.8550
AT2G26680			unknown protein		Lus10019418 [exp]	16.4	0.8315
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	16.6	0.8640

Compare expression of checked genes

Lus10027508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.