Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24010 937 / 0 Protein kinase superfamily protein (.1) AT3G46290 690 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G59700 676 / 0 Protein kinase superfamily protein (.1) AT5G54380 646 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT4G39110 639 / 0 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 636 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 616 / 0 Protein kinase superfamily protein (.1) AT3G51550 552 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT2G23200 548 / 0 Protein kinase superfamily protein (.1) AT1G30570 545 / 0 HERK2 hercules receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039274 [exp] 1514 / 0 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10028140 [exp] 689 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 689 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10037887 [exp] 630 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10021632 [exp] 614 / 0 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1) Lus10017478 [exp] 610 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10000562 [exp] 602 / 0 AT5G61350 965 / 0.0 Protein kinase superfamily protein (.1) Lus10028805 [exp] 600 / 0 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10003312 [exp] 567 / 0 AT3G46290 741 / 0.0 hercules receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G143049 [exp] 1007 / 0 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.004G079700 [exp] 957 / 0 AT5G24010 1031 / 0.0 Protein kinase superfamily protein (.1) Potri.009G026600 [exp] 712 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.001G234200 [exp] 709 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.011G128000 [exp] 650 / 0 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.001G405500 [exp] 647 / 0 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.010G213200 [exp] 631 / 0 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.015G061700 [exp] 624 / 0 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.009G120400 [exp] 613 / 0 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.004G158700 [exp] 613 / 0 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0661 [flax] [poplar] Gain PF06697 [flax] [poplar] DUF1191 Protein of unknown function (DUF1191)
Representative CDS sequence Show only first row Show all	>Lus10027509 pacid=23144443 polypeptide=Lus10027509 locus=Lus10027509.g ID=Lus10027509.BGIv1.0 annot-version=v1.0 ATGGAGCTCAAATTCTTCTACTTCTTCTTCGTCTTCTTCACCCTTTTCACACTATCTTCATCTTTCGTCCCAGCCGACAACTACCTCCTTAACTGCGGCT CCACCACTTCCGCCTCCGTCTACAACAGGCTCTTCCTCGCCGATTCCGATTTCCTCCTCGCCGGCGGAAAAAAATCCACCTCTCTGACAAACCAAACCCC GTCGTCGTCGCTGACGACGAACTCGCTCTACGCCACCGCCAGAGTCTTCACCGCAGCCTCCGCCGGCTACAAATTCAACATCAAGCAGAACGGGACCCAC TTGGTACGCTTCCACTTCTCCCCTTTCCCTTCCCAATCTTTCAACCTCTCCGCCTCCAAATTCACCGTCCTGGTCAACGGCGAGCCCGTCCTGCGAGACT TCGGCGCCGTGAATCTCGTAATCAAGGAGTACATCTTGAGAATCGACGGGGAGGAGCTCCAGATCCAGTTCCGACCCGGCTCTGGGGGGTCGGAGTTCGG GTTCGTGAACGCGATCGAGGTTTTCTCAGCTCCGAAAGGGTTGATAATCGACGAAGGAGTTAGGTTAGTCGGGGATAGAATTGGGGATTTCGAAAATCTC TCGTCAAACGTGTTGGAGACGATTCATAGGGTTAACGTCGGGGGGTCCAAAGTGACGCCGTTTAACGACACCTTATGGCGGAATTGGATAACGGATGACG AGTTTCTTGTTCTTGAATCCGCGGCGAAGAAGGTCTCGTCCACTCACACGCCGAACTACCAGGAAGGTGGGGCCACGAGGGATTCGGCGCCGGATAGCGT GTACATGACGGCGAGGTCCATGAACAGAGAAAACGCCACTGTTGGTGCCAAGTTTAACGTAAGTTGGACTTTCCCGGTAAGTTCTAGCGGGGTTCAGCAT TTGATTCGGTTGCATTTCTGCGATATAGTTAGCACGGGGCTGAACCAGTTGTATTTCAATGTTTACATTAACGACTACGAGGTGTACAAGGATTTGGATT TGTCGTCATTGACTTTCCACATGCTTGCGTCTCCGATGTGGGTTGACTTCGTTGCTGACTCTGACGAGTCAGGGGATGTGAGGGTTAGCGTTGGGCCGTC TGATCTGAGCAGTTCGTCGAAGGTGAACGCGATTCTGAATGGGGTTGAGATAATGAAGATGGTGAATCTCGCTGGGTTTTCGGGTAGAAAGAAGAGGATC ATAACATGGGTTGTGATTGGTTCGGTTTTGGGAGGGGTTGCGTTGTTGGGACTGGTTGGGTTTGTCATTCTCTGTGCTTGTAGATGTAGTAAGAAGGAGA AGAGAGCTAAGACGAGACGTTCCGAAAGTTCGGGATGGACGCCATTACGTGGAGCTGGTAGTTTAGGAAGCAGAATGTCTGAGCTTACTGTTACCAGATC ACCAGCTGGGTACAGCATGAAGATCCCTTTTGACGATATCCAATTCGCTACAAAGAATTTCGACAAGAGCTTGATCATCGGAATGGGAGGGTTCGGAATG GTGTATAAAGGCGTCCTTAAGGACAACAACACCAAGATTGCTGTCAAAAGAGGCGTACCCGGTTCTCGCCAGGGACTCCCCGAGTTCCACTCGGAGATCA CGATTCTATCCAGAATCCGACACAGGCATCTCGTCTCGTTGGTTGGTTACTGCGAGGAACAATCCGAGATGATTCTAGTCTACGAGTACATGGAGCACGG CCCGTTAAAATGCCATCTGTACGGCCAATTAGCTCGAGAAAAGCATTCTCCGCTCTCGTGGAAGCAAAGGCTCGATATATGCATCGGTGCAGCGAGGGGG ATACATTATCTCCATACAGGGTTCATCCCAGGGATCATCCATCGGGACATCAAGTCGACGAACATCTTGCTTGACGAGAGCTACGAGGCCAAAGTCGCTG ACTTTGGCCTCTCGAGAAGCGGACCGTGTCTAGACGAGACACATGTGAGCACAGGAGTGAAAGGGAGTTTTGGGTATTTGGACCCGGAATATTTCCGAAG GCAGCAGTTGACGGATAAGTCGGATGTTTACTCCTTCGGAGTCGTGATGCTGGAAGTGCTCTGCGCTAGGCCGGCAGTTGACCCTTTGCTTGCGAGGGAA CAGGTTAACTTGGCGGAATGGGCTTTACATTGGAAGCAGAATGGGAAGCTAGATCAAATCGTGGATCCGAATATCAAGGGGCAGATTAAGCAGAGCTCGC TCGAGAAGTTTGGAGAGACGGCTGAGAAGTGTTTGGCCGAGTATGGTGTGGATCGGCCGAGTATGGGAGATGTGCTATGGAATTTGGAGTATGCACTTCA GCTTCAGGAATCTGGACCGTTGAATGCTGCAGAAGATGGTGGTGTAATGGATGTGCCGCTTGTTTCGGCCATGGATGTTCACGGCGGGGGGAATGAAGTG AACTATAGCTCGGACGTGTCGACGACTCAGGTTTTCTCTCAGCTCATTACCAATGAAGGTAGGTAG
AA sequence Show only first row Show all	>Lus10027509 pacid=23144443 polypeptide=Lus10027509 locus=Lus10027509.g ID=Lus10027509.BGIv1.0 annot-version=v1.0 MELKFFYFFFVFFTLFTLSSSFVPADNYLLNCGSTTSASVYNRLFLADSDFLLAGGKKSTSLTNQTPSSSLTTNSLYATARVFTAASAGYKFNIKQNGTH LVRFHFSPFPSQSFNLSASKFTVLVNGEPVLRDFGAVNLVIKEYILRIDGEELQIQFRPGSGGSEFGFVNAIEVFSAPKGLIIDEGVRLVGDRIGDFENL SSNVLETIHRVNVGGSKVTPFNDTLWRNWITDDEFLVLESAAKKVSSTHTPNYQEGGATRDSAPDSVYMTARSMNRENATVGAKFNVSWTFPVSSSGVQH LIRLHFCDIVSTGLNQLYFNVYINDYEVYKDLDLSSLTFHMLASPMWVDFVADSDESGDVRVSVGPSDLSSSSKVNAILNGVEIMKMVNLAGFSGRKKRI ITWVVIGSVLGGVALLGLVGFVILCACRCSKKEKRAKTRRSESSGWTPLRGAGSLGSRMSELTVTRSPAGYSMKIPFDDIQFATKNFDKSLIIGMGGFGM VYKGVLKDNNTKIAVKRGVPGSRQGLPEFHSEITILSRIRHRHLVSLVGYCEEQSEMILVYEYMEHGPLKCHLYGQLAREKHSPLSWKQRLDICIGAARG IHYLHTGFIPGIIHRDIKSTNILLDESYEAKVADFGLSRSGPCLDETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVMLEVLCARPAVDPLLARE QVNLAEWALHWKQNGKLDQIVDPNIKGQIKQSSLEKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLQESGPLNAAEDGGVMDVPLVSAMDVHGGGNEV NYSSDVSTTQVFSQLITNEGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24010			Protein kinase superfamily pro...		Lus10027509 [exp]	0	1
					Lus10031697 [exp]	2.4	0.8086
AT5G24010			Protein kinase superfamily pro...		Lus10039274 [exp]	5.5	0.7951
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10034931 [exp]	5.9	0.7709
AT5G13090			unknown protein		Lus10011343 [exp]	6.9	0.6917
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10036225 [exp]	11.8	0.7795
AT2G23340	AP2_ERF	DEAR3	DREB and EAR motif protein 3 (...		Lus10010043 [exp]	12.7	0.7730
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10017830 [exp]	13.0	0.7078
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10040678 [exp]	15.4	0.8008
AT3G50230			Leucine-rich repeat protein ki...		Lus10030067 [exp]	18.3	0.7814
AT1G23780			F-box family protein (.1)		Lus10012441 [exp]	18.8	0.7595

Compare expression of checked genes

Lus10027509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.