Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25680 337 / 8e-118 PPPDE putative thiol peptidase family protein (.1) AT4G25660 333 / 4e-116 PPPDE putative thiol peptidase family protein (.1) AT2G25190 100 / 6e-25 PPPDE putative thiol peptidase family protein (.1) AT5G25170 90 / 2e-21 PPPDE putative thiol peptidase family protein (.1) AT1G47740 91 / 3e-21 PPPDE putative thiol peptidase family protein (.1.2) AT5G47310 90 / 4e-21 PPPDE putative thiol peptidase family protein (.1) AT1G80690 89 / 6e-21 PPPDE putative thiol peptidase family protein (.1) AT4G17486 88 / 1e-20 PPPDE putative thiol peptidase family protein (.1.2) AT4G31980 88 / 1e-19 unknown protein AT3G07090 59 / 5e-10 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039275 [exp] 523 / 0 AT4G25680 348 / 6e-122 PPPDE putative thiol peptidase family protein (.1) Lus10038841 [exp] 400 / 7e-143 AT4G25680 343 / 2e-120 PPPDE putative thiol peptidase family protein (.1) Lus10014960 [exp] 398 / 8e-142 AT4G25680 341 / 1e-119 PPPDE putative thiol peptidase family protein (.1) Lus10007844 [exp] 100 / 2e-25 AT4G17486 277 / 3e-95 PPPDE putative thiol peptidase family protein (.1.2) Lus10004755 [exp] 100 / 3e-25 AT4G17486 273 / 2e-93 PPPDE putative thiol peptidase family protein (.1.2) Lus10017127 [exp] 98 / 1e-24 AT5G25170 312 / 3e-109 PPPDE putative thiol peptidase family protein (.1) Lus10018326 [exp] 98 / 1e-24 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1) Lus10040170 [exp] 97 / 3e-24 AT4G17486 283 / 9e-98 PPPDE putative thiol peptidase family protein (.1.2) Lus10004372 [exp] 97 / 1e-22 AT5G47310 244 / 1e-77 PPPDE putative thiol peptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G143132 [exp] 384 / 4e-136 AT4G25680 331 / 2e-115 PPPDE putative thiol peptidase family protein (.1) Potri.004G079800 [exp] 382 / 3e-135 AT4G25680 339 / 1e-118 PPPDE putative thiol peptidase family protein (.1) Potri.003G080300 [exp] 99 / 9e-25 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1) Potri.018G021700 [exp] 98 / 2e-24 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.006G261500 [exp] 97 / 3e-24 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.001G154400 [exp] 96 / 2e-23 AT5G47310 308 / 4e-107 PPPDE putative thiol peptidase family protein (.1) Potri.001G047800 [exp] 90 / 2e-21 AT1G80690 298 / 2e-103 PPPDE putative thiol peptidase family protein (.1) Potri.003G180400 [exp] 87 / 2e-20 AT1G80690 303 / 1e-105 PPPDE putative thiol peptidase family protein (.1) Potri.T126004 [exp] 85 / 2e-19 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 85 / 2e-19 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10027510 pacid=23144548 polypeptide=Lus10027510 locus=Lus10027510.g ID=Lus10027510.BGIv1.0 annot-version=v1.0 ATGACGGAAGTGATATTGCACATATACGATGTGACCAACAGTGGATCGGAGAAGACGAACACGACGATCATGCAGATCAACAAGATCTTCAAGGACGGTA TCGGCCTCGGCGGCATCTTCCACAGTGCTATTCAGGTTTATGGAGAAGATGAATGGTCGTTTGGCTTTTGCGAAACTGGAACCGGGGTGTTCAATTGCCC TTCCGGAAAGAATCCAATGTATACATACCGTGAAAGCATTGTGCTTGGGAAAACCAACTTTTCACGAATGAAAGTGAATCAGATCCTACGAGAACTTAGT TGGGAATGGCCTGGAAATTGTTATGATCTGTTGGCCAAGAACTGTAATCACTTCTGTGATGAGCTCTGTGAAAAGCTAGGCGTCCCGAAACTTCCAGGCT GGGTTAACCGATTTGCCAATGCCGGTGATGCTGCTGTTGAAATAGCTGGAAACACAGCCATACGATTTAGACAGGCTAAAACGGAGATTGTCTCAGCAAG TAAAGTAGCCTACCGTTTCCTACTGGGTGTTACCTCCAACAACGGTTCAACAGTTGAATCCCCTGGAAACTCCAACGGAGGAGGTTCCCCTAGGATGCAA TCAACTTGGTTCAAGAATCTCGTTACCAACGGGGCAAAACCTTCTACCAGTACAGAAGTCGACTCGCTGCAGGTTGATTCGGTTTCCACGCCGCCACAAA TTCAGCAAGTTTCACGGCAGGAAGATTCGGAGGTATCACACCAGCAGAATGGACAGGGAGAGGACTCGCACGGTCTGCTGAGACACAACTCGAGGCACTA CGACTGA
AA sequence Show only first row Show all	>Lus10027510 pacid=23144548 polypeptide=Lus10027510 locus=Lus10027510.g ID=Lus10027510.BGIv1.0 annot-version=v1.0 MTEVILHIYDVTNSGSEKTNTTIMQINKIFKDGIGLGGIFHSAIQVYGEDEWSFGFCETGTGVFNCPSGKNPMYTYRESIVLGKTNFSRMKVNQILRELS WEWPGNCYDLLAKNCNHFCDELCEKLGVPKLPGWVNRFANAGDAAVEIAGNTAIRFRQAKTEIVSASKVAYRFLLGVTSNNGSTVESPGNSNGGGSPRMQ STWFKNLVTNGAKPSTSTEVDSLQVDSVSTPPQIQQVSRQEDSEVSHQQNGQGEDSHGLLRHNSRHYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25680			PPPDE putative thiol peptidase...		Lus10027510 [exp]	0	1
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10037071 [exp]	1.0	0.8984
AT2G27260			Late embryogenesis abundant (L...		Lus10043411 [exp]	10.2	0.8484
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Lus10029924 [exp]	11.1	0.8664
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	11.7	0.8750
AT1G29330		ATERD2, AERD2, ...	ARABIDOPSIS THALIANA ENDOPLASM...		Lus10007314 [exp]	12.5	0.7632
AT2G18840			Integral membrane Yip1 family ...		Lus10006966 [exp]	16.2	0.8516
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10041902 [exp]	17.7	0.8423
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10013704 [exp]	19.0	0.7263
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10020379 [exp]	20.0	0.8504
AT1G19480			DNA glycosylase superfamily pr...		Lus10010824 [exp]	21.9	0.8510

Compare expression of checked genes

Lus10027510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.