Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25670 131 / 1e-38 unknown protein AT4G25690 124 / 1e-35 unknown protein AT5G52550 114 / 2e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039276 [exp] 338 / 7e-120 AT4G25670 159 / 2e-49 unknown protein Lus10014961 [exp] 117 / 3e-33 AT4G25670 154 / 5e-48 unknown protein Lus10038842 [exp] 118 / 4e-33 AT4G25670 149 / 3e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G079900 [exp] 182 / 5e-58 AT4G25670 159 / 2e-49 unknown protein Potri.017G143215 [exp] 164 / 3e-51 AT4G25670 151 / 4e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027511 pacid=23144583 polypeptide=Lus10027511 locus=Lus10027511.g ID=Lus10027511.BGIv1.0 annot-version=v1.0 ATGGATAGCTTAGCGAGCAATAAGATGCTGCAGCCTCCGGCTGTAAGAAAAGTGAAGAAGAAAGAGGCGAAAGGCGAGCTGGATCGCCTGAAACAGGCTG AGAAGAAGAAGAGGCGTCTAGAGAAAGCTCTTGCTACTTCTGCAGCCATTAGGTCTGAACTGGAGAAGAAAAAGCAGAAAAAGAAAGAAGAACAACAGAG GCTCGACGAAGAAGGAGCTTCCATAGCCGAGGCAGTAGCTCTGCAAGTCCTCCTGGGTGAGGACTCTGATGAATCCGGCTTCATCAACCCGTGGGATGGT GCATTTCTCCCTCATCAGGACTTCTCAAGGCATTCACTCGGAAAAATCGGGTGGATCCCTAATAATTATTCTGCTGGATACAATGCAGCGGATTATAATA ACGGTGAGTGGTCTTCTGCGTTCTCTTTTAACTCTCTAGGAAGGAATCATCTACGTGGTGGTGGTGTATCGTACTTTGACGATGATGGGAGTTGGGGAAG AACGGAGTATGCTGCTGCTGGTCTCATTGCTGCTCAGGCCGTTTCTTCCCTCAGGATCAGAGATGATTCTACTGTCGTTGACGGATTCGTCTTGGATGGT ATGTTGAGGGGATAA
AA sequence Show only first row Show all	>Lus10027511 pacid=23144583 polypeptide=Lus10027511 locus=Lus10027511.g ID=Lus10027511.BGIv1.0 annot-version=v1.0 MDSLASNKMLQPPAVRKVKKKEAKGELDRLKQAEKKKRRLEKALATSAAIRSELEKKKQKKKEEQQRLDEEGASIAEAVALQVLLGEDSDESGFINPWDG AFLPHQDFSRHSLGKIGWIPNNYSAGYNAADYNNGEWSSAFSFNSLGRNHLRGGGVSYFDDDGSWGRTEYAAAGLIAAQAVSSLRIRDDSTVVDGFVLDG MLRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25670			unknown protein		Lus10027511 [exp]	0	1
AT1G22040			Galactose oxidase/kelch repeat...		Lus10020960 [exp]	2.0	0.9114
AT4G25670			unknown protein		Lus10039276 [exp]	2.2	0.9178
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10033816 [exp]	3.0	0.9025
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	7.7	0.8861
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	9.5	0.8621
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10016898 [exp]	9.8	0.8725
AT1G29690		CAD1	constitutively activated cell ...		Lus10025235 [exp]	9.9	0.8651
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10019421 [exp]	10.0	0.8767
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	12.7	0.8669
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10040225 [exp]	13.2	0.8370

Compare expression of checked genes

Lus10027511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.