Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22370 112 / 6e-30 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22400 114 / 1e-29 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 106 / 7e-27 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22340 106 / 9e-27 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22360 104 / 4e-26 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G78270 102 / 2e-25 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G55700 96 / 5e-23 UDP-Glycosyltransferase superfamily protein (.1) AT5G59590 92 / 9e-22 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT3G55710 91 / 2e-21 UDP-Glycosyltransferase superfamily protein (.1) AT5G59580 91 / 3e-21 UGT76E1 UDP-glucosyl transferase 76E1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039277 [exp] 177 / 4e-53 AT1G22400 499 / 3e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013921 [exp] 140 / 1e-40 AT1G22380 320 / 3e-107 UDP-glucosyl transferase 85A3 (.1) Lus10013923 [exp] 144 / 2e-40 AT1G22400 537 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013919 [exp] 139 / 3e-40 AT1G22380 318 / 2e-106 UDP-glucosyl transferase 85A3 (.1) Lus10013922 [exp] 140 / 3e-39 AT1G22400 533 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013920 [exp] 139 / 4e-39 AT1G22400 488 / 3e-170 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013924 [exp] 134 / 4e-37 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10000993 [exp] 132 / 3e-36 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013925 [exp] 124 / 4e-33 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G313000 [exp] 125 / 8e-34 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G022300 [exp] 121 / 3e-32 AT1G22360 518 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023700 [exp] 121 / 4e-32 AT1G22370 476 / 2e-165 UDP-glucosyl transferase 85A5 (.1.2) Potri.017G052166 [exp] 120 / 6e-32 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 120 / 7e-32 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023101 [exp] 120 / 8e-32 AT1G22360 516 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G022600 [exp] 120 / 1e-31 AT1G22400 515 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G022500 [exp] 119 / 1e-31 AT1G22400 514 / 3e-180 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.017G052232 [exp] 119 / 1e-31 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 119 / 1e-31 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10027513 pacid=23144626 polypeptide=Lus10027513 locus=Lus10027513.g ID=Lus10027513.BGIv1.0 annot-version=v1.0 ATGGTGTTCACCCTGGATGTAGCTAAGGAGCTCGGAATTCCCGACGCGCTCTTCTCGGCTATGAACGCGTGTGCCACACTGGCCTACCTCAGTTCTAATC GTCTTCTCGAAAGAGGCTTGGTTCCTGTTAAAGGAGGCCAACTCTGTTTTGTATGTGAATTTCGAAAGCATGACGGTTGTAACCGCGGATCGGCTCGTCG AATTCGCGTGGGGCTGACGAAAAGCGAGAATCCGTTCTTGTGGGTAACCATGCCCAATCTTGTTTTCGGGCGTTCTTCGATGCCTCTCTCCTTTGTCGAT GAGTCAAAGGGGAGAGGCATGTTAGCTTGGTGGTGCGATCAGAAACAAGTCCTAAAGCACCCTGCAATCGGAAGGTTCCTAAGTCACATGGGGTGGAACT CGACGATAGAGAGTTTGTCGAATGGGATACCAATGACATGTTGGTCGTATTTTGGGGATCACCAGATAATTTACTTCTACGCGTGTAGGGAATGGAGGGT CGGTGTGGAGATTGAAAATGAAGTGAAGAGCGAAGTTGTGGAGAAGCTTGTGAAGGAGGTTATGGAAGGTGAGAAAAGTAAGGATATGAAGGGAAAGCCA TGGAGTGGAAAGTGA
AA sequence Show only first row Show all	>Lus10027513 pacid=23144626 polypeptide=Lus10027513 locus=Lus10027513.g ID=Lus10027513.BGIv1.0 annot-version=v1.0 MVFTLDVAKELGIPDALFSAMNACATLAYLSSNRLLERGLVPVKGGQLCFVCEFRKHDGCNRGSARRIRVGLTKSENPFLWVTMPNLVFGRSSMPLSFVD ESKGRGMLAWWCDQKQVLKHPAIGRFLSHMGWNSTIESLSNGIPMTCWSYFGDHQIIYFYACREWRVGVEIENEVKSEVVEKLVKEVMEGEKSKDMKGKP WSGK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10027513 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	3.7	1.0000
					Lus10027530 [exp]	6.0	1.0000
					Lus10024762 [exp]	6.0	1.0000
					Lus10026042 [exp]	7.7	1.0000
					Lus10002313 [exp]	10.2	1.0000
AT5G56790			Protein kinase superfamily pro...		Lus10000773 [exp]	10.6	1.0000
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10003438 [exp]	13.0	1.0000
					Lus10006296 [exp]	13.5	1.0000
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10023340 [exp]	15.0	1.0000
					Lus10012669 [exp]	17.3	1.0000

Compare expression of checked genes

Lus10027513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.