Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22400 117 / 4e-32 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22370 116 / 6e-32 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22360 115 / 1e-31 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22340 113 / 1e-30 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G78270 111 / 7e-30 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22380 109 / 2e-29 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT3G02100 57 / 1e-10 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 54 / 1e-09 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT3G46660 54 / 2e-09 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT2G31750 53 / 3e-09 UGT74D1 UDP-glucosyl transferase 74D1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039277 [exp] 175 / 7e-54 AT1G22400 499 / 3e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013923 [exp] 143 / 7e-42 AT1G22400 537 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013924 [exp] 131 / 3e-37 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013922 [exp] 129 / 1e-36 AT1G22400 533 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10000993 [exp] 117 / 5e-32 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013925 [exp] 116 / 1e-31 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024583 [exp] 114 / 6e-31 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032220 [exp] 112 / 2e-30 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024584 [exp] 111 / 7e-30 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G052166 [exp] 117 / 4e-32 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 117 / 4e-32 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 116 / 6e-32 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.005G073766 [exp] 115 / 1e-31 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 115 / 1e-31 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.002G098300 [exp] 114 / 7e-31 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 112 / 3e-30 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052100 [exp] 112 / 4e-30 AT1G22360 612 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 110 / 1e-29 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 110 / 2e-29 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027514 pacid=23144463 polypeptide=Lus10027514 locus=Lus10027514.g ID=Lus10027514.BGIv1.0 annot-version=v1.0 ATGAAACGGGTGGTCGTCGCCGCCAAACCCCAAAACAAGCCGGCGCCAGTGCCGAGGCCACACGCCGTCTGCGTTCCCCTTCCGTTTCAAGGACACATAA ACCCGATGCTCCGAGTGGCGAAACTCCTCCACTCACGAAGCTTCCATATAACCTTCGTCAACACAGAGTCCAACCACAACCGCCTCCTCAAGTCATGGGG AGGCAGCGCCACCGCCCTGCCGCCGGGATTCAACTTCGAGACCTTCCCTGCAGGGCTTCCGCTGTCTGACGACATGGACATAAGCCAGATGGTCCCGTTG GTGTGCGAATCCATCCTAAACAACTGGTTGGCTCCGTTTTAA
AA sequence Show only first row Show all	>Lus10027514 pacid=23144463 polypeptide=Lus10027514 locus=Lus10027514.g ID=Lus10027514.BGIv1.0 annot-version=v1.0 MKRVVVAAKPQNKPAPVPRPHAVCVPLPFQGHINPMLRVAKLLHSRSFHITFVNTESNHNRLLKSWGGSATALPPGFNFETFPAGLPLSDDMDISQMVPL VCESILNNWLAPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10027514 [exp]	0	1
					Lus10010271 [exp]	1.7	0.9389
AT3G07840			Pectin lyase-like superfamily ...		Lus10011030 [exp]	4.5	0.8698
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030463 [exp]	5.5	0.8468
AT3G28960			Transmembrane amino acid trans...		Lus10023029 [exp]	5.8	0.8779
					Lus10012132 [exp]	6.2	0.8737
AT2G37890			Mitochondrial substrate carrie...		Lus10036193 [exp]	6.9	0.8285
					Lus10000890 [exp]	10.1	0.8093
					Lus10025017 [exp]	12.6	0.7805
AT5G01250			alpha 1,4-glycosyltransferase ...		Lus10035526 [exp]	20.4	0.7812
AT5G51950			Glucose-methanol-choline (GMC)...		Lus10015012 [exp]	23.9	0.8426

Compare expression of checked genes

Lus10027514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.