Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25700 379 / 1e-132 BCH1, B1, CHY1, BETA-OHASE1 ,BETA-OHASE 1 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2) AT5G52570 375 / 5e-131 BCH2, B2, CHY2, BETA-OHASE2 ,BETA-OHASE 2 BETA CAROTENOID HYDROXYLASE 2, beta-carotene hydroxylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039278 [exp] 590 / 0 AT4G25700 418 / 7e-148 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G145700 [exp] 393 / 3e-138 AT4G25700 352 / 8e-122 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2) Potri.004G074000 [exp] 368 / 4e-128 AT4G25700 363 / 3e-126 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2) Potri.001G100200 [exp] 345 / 2e-119 AT4G25700 323 / 1e-110 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10027515 pacid=23144505 polypeptide=Lus10027515 locus=Lus10027515.g ID=Lus10027515.BGIv1.0 annot-version=v1.0 ATGGCGGCAGGACTCTCCTCCGCCGCCGTCATAGTCCCCAAGCCTCTCCGCCAAATCCACGCCTCTCACCTCCTCCCGAAATTCCCCTTCCACCCTCCCG TTCGGCCGTACAACAATCCCACTCTCTTCCGCAGACCCCGGACGAAGTTCTCCGTCTGCTTCGTACTCGAGGAAACGAAGCGTAGCAGCAGCATCGAACG AATTCAGATTCGCGGCGAGGACGAGGAAACAGTTATGGAGCCGGATGAGTCGCCGTCTACGACGAATCCGCCGCAGATCTTGCCGCCTCGAGCCGCGGAG AGGCTGGCGCGGAAGAAATCGGAGAGGACTACTTATCTGGTAGCCGCCGTCATGTCCAGCTTAGGCATCACTTCCATGGCAGTCATGTCCGTTTACTACC GCTTCCATTGGCAATTCGAGGGCGGAGAGATGCCGTTATCGGAAATGTTCAGTACGTTCGCCTTCTCAATGGGAGCTGCGGTAGGAATGGAATTTTGGGC GAGGTGGGCGCATAAGGCGCTGTGGCACTCGTCCTTGTGGCATATGCACGAGTCTCACCATCGGCCAAGAGAAGGGCCATTCGAGCTAAACGACGTGTTT GCCATAATCAACGCAGTTCCAGCGATTGGCCTATTGTCATACGGATTCTTCAACAAAGGATTGATTCCTGGACTCTGTTTCGGAGCTGGGCTGGGAATTA CGGTGTTCGGCATTGCATACATGTTTGTCCATGACGGCCTCGTCCACAAGAGGTTCCCGGTGGGTCCCATCGCCAACGTTCCTTATTTCCGCAAAGTAGC TGCCGCCCACCAGCTTCACCACTCGGAGAAGTTCGAAGGTGTCCCATATGGGTTGTTTCTAGGCCCCAAGGAACTTGAGGAAGTTGGAGGACTGGAGGAA TTAGAGAAGGAGATTGGTAGGAGGATCAAAGCTTACAACAAGGGTTTATAA
AA sequence Show only first row Show all	>Lus10027515 pacid=23144505 polypeptide=Lus10027515 locus=Lus10027515.g ID=Lus10027515.BGIv1.0 annot-version=v1.0 MAAGLSSAAVIVPKPLRQIHASHLLPKFPFHPPVRPYNNPTLFRRPRTKFSVCFVLEETKRSSSIERIQIRGEDEETVMEPDESPSTTNPPQILPPRAAE RLARKKSERTTYLVAAVMSSLGITSMAVMSVYYRFHWQFEGGEMPLSEMFSTFAFSMGAAVGMEFWARWAHKALWHSSLWHMHESHHRPREGPFELNDVF AIINAVPAIGLLSYGFFNKGLIPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIANVPYFRKVAAAHQLHHSEKFEGVPYGLFLGPKELEEVGGLEE LEKEIGRRIKAYNKGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Lus10027515 [exp]	0	1
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020485 [exp]	4.6	0.8697
AT2G38530		cdf3, LP2, LTP2	cell growth defect factor-3, l...		Lus10025152 [exp]	7.5	0.8140
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	9.0	0.8458
AT1G71090			Auxin efflux carrier family pr...		Lus10004059 [exp]	9.5	0.8302
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10006036 [exp]	11.6	0.8558
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10027809 [exp]	12.0	0.8516
AT1G11960			ERD (early-responsive to dehyd...		Lus10024477 [exp]	13.5	0.8294
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10036636 [exp]	13.9	0.8566
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10012602 [exp]	14.1	0.8137
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10019386 [exp]	14.2	0.8486

Compare expression of checked genes

Lus10027515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.